Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009281.1 Corchorus capsularis cultivar CVL-1 contig09302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3280
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:3056 original size:17 final size:17

Alignment explanation


    Indices: 3034--3068  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       3024 TGAAGAATGA

                    *   *    
       3034 TATGGGTACTTATATGC
          1 TATGGGTAATTAGATGC

                             
       3051 TATGGGTAATTAGATGC
          1 TATGGGTAATTAGATGC

             
       3068 T
          1 T

       3069 TCTAATTTGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40


Consensus pattern (17 bp):   
TATGGGTAATTAGATGC
Done.