Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009287.1 Corchorus capsularis cultivar CVL-1 contig09308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5604

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13--249
27
8.3
27
73
13
172
26
34
31
8
1.86
13--216
57
3.6
56
84
10
236
25
34
31
8
1.86
13--227
115
1.9
112
83
9
258
26
34
30
8
1.86
1180--1373
32
5.9
33
89
2
209
30
31
14
22
1.94
1180--1372
17
11.7
17
79
4
200
31
32
13
22
1.93
1767--1822
22
2.5
22
86
11
71
41
10
10
37
1.75
1908--2146
22
11.1
22
73
12
124
37
14
9
38
1.79
1988--2103
60
1.9
61
85
5
164
37
14
8
39
1.77
2049--2164
43
2.7
45
84
10
145
35
15
10
38
1.82
2273--2418
66
2.2
66
80
3
152
36
15
8
39
1.79
2244--2483
22
10.8
23
71
11
110
34
15
10
40
1.80
2523--2662
22
6.4
21
71
14
88
35
20
8
35
1.83
2523--2879
44
8.2
44
68
17
142
36
17
9
35
1.82
2752--2878
65
2.0
65
81
9
152
38
14
10
37
1.80
2706--2880
22
8.0
21
72
14
113
39
16
9
34
1.81
3049--3086
19
2.0
20
85
15
53
63
2
5
28
1.30
5463--5529
32
2.1
32
86
5
91
50
2
14
31
1.58
5558--5602
2
22.0
2
95
4
81
48
0
2
48
1.13

Tables:   1

The End!