Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009291.1 Corchorus capsularis cultivar CVL-1 contig09312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13965

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
226--291
32
2.1
32
94
0
114
43
33
3
19
1.66
1237--1314
24
3.1
27
66
21
78
25
5
56
12
1.57
1236--1371
42
3.1
42
89
6
182
30
6
50
11
1.64
3698--3739
4
11.2
4
82
14
54
0
19
0
80
0.70
3698--3736
11
3.5
11
86
6
53
0
17
0
82
0.68
5783--6030
48
5.3
48
90
2
355
28
6
46
17
1.74
6114--6156
20
2.1
21
83
12
54
2
4
55
37
1.33
6091--6245
51
3.0
51
88
0
220
6
8
50
34
1.58
9008--9042
18
1.9
18
88
0
52
14
0
62
22
1.31
9058--9593
48
11.2
48
89
0
628
20
6
52
20
1.69
9379--9449
21
3.1
21
64
21
52
16
5
59
18
1.56
9393--9479
27
3.4
27
65
18
78
17
5
57
19
1.59
9376--9497
24
5.1
24
61
15
63
17
5
58
18
1.58
9088--9596
144
3.5
144
87
0
705
20
6
52
20
1.69
9088--9596
96
5.3
96
88
0
696
20
6
52
20
1.69
13400--13459
31
1.9
31
93
0
102
36
11
18
33
1.87
13905--13965
2
30.5
2
96
0
113
52
0
47
0
1.00

Tables:   1

The End!