Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009295.1 Corchorus capsularis cultivar CVL-1 contig09316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27177

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3718--3862
69
2.1
69
93
2
247
41
20
13
24
1.88
5044--5280
120
2.0
120
99
0
465
42
16
5
35
1.73
6260--6518
123
2.1
122
81
7
319
28
18
13
38
1.90
6896--6935
21
1.9
21
84
0
53
37
5
32
25
1.77
8477--8649
87
2.0
86
91
1
283
28
13
21
35
1.92
14296--14519
115
1.9
115
95
0
403
16
25
16
40
1.90
17679--17742
33
1.9
33
84
6
85
39
0
14
46
1.44
17820--17876
30
1.9
30
85
7
80
35
15
19
29
1.93
17893--17943
21
2.4
21
93
6
86
27
23
19
29
1.98
18573--18629
22
2.5
24
72
18
59
28
10
8
52
1.65
22394--22469
27
2.8
27
89
0
116
40
26
15
17
1.89
27051--27107
30
1.9
30
88
0
87
33
15
21
29
1.94
27124--27174
21
2.4
21
93
6
86
27
23
19
29
1.98

Tables:   1

The End!