Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009299.1 Corchorus capsularis cultivar CVL-1 contig09320, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15219
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:2669 original size:15 final size:15

Alignment explanation


    Indices: 2606--2676  Score: 54
    Period size: 15  Copynumber: 4.8  Consensus size: 15

       2596 AAAATGCAAG

                 *      *  
       2606 AATTTTAAATTCAAT
          1 AATTTGAAATTCTAT

                         * 
       2621 AATTTGAAATTCTTT
          1 AATTTGAAATTCTAT

            **  * *      * 
       2636 GGTTGGGAATT-TGT
          1 AATTTGAAATTCTAT

                           
       2650 AATTTGAAATTCTAT
          1 AATTTGAAATTCTAT

                 *      
       2665 AATTTCAAATTC
          1 AATTTGAAATTC

       2677 ATTGTTTGGA


Statistics
Matches: 41,  Mismatches: 14, Indels: 2
        0.72            0.25        0.04

Matches are distributed among these distances:
  14    9  0.22
  15   32  0.78

ACGTcount: A:0.35, C:0.07, G:0.11, T:0.46


Consensus pattern (15 bp):   
AATTTGAAATTCTAT
Done.