genome.fa.s9301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009301.1 Corchorus capsularis cultivar CVL-1 contig09322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118784

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631--685	24	2.3	24	93	0	92	32	23	27	16	1.96
712--794	27	3.1	26	83	10	105	21	40	18	19	1.91
3199--3260	32	1.9	33	93	3	108	37	22	17	22	1.94
3316--3402	24	3.6	24	88	0	129	18	31	36	13	1.90
3576--3621	24	1.9	24	90	0	74	23	26	23	26	2.00
8514--8538	13	1.9	13	100	0	50	96	0	4	0	0.24
10709--10746	14	2.5	15	87	12	60	36	0	60	2	1.11
11332--11378	24	1.9	25	95	4	87	27	10	10	51	1.70
11406--11462	27	2.1	28	90	3	89	57	5	28	8	1.50
13762--13804	3	14.3	3	100	0	86	65	0	0	34	0.93
21620--21657	15	2.4	16	91	8	69	47	5	0	47	1.24
22940--22975	15	2.4	15	90	0	63	36	8	5	50	1.56
23754--23779	12	2.2	12	100	0	52	34	7	34	23	1.83
28022--28403	156	2.4	156	77	8	418	34	19	14	31	1.92
33147--33328	92	2.0	93	94	3	323	13	29	28	28	1.94
34863--35233	156	2.4	155	79	7	378	35	19	13	31	1.91
35786--35812	7	3.9	7	100	0	54	29	0	0	70	0.88
46373--46400	3	9.3	3	100	0	56	0	32	0	67	0.91
47748--47778	2	15.5	2	100	0	62	48	0	0	51	1.00
48405--48429	2	12.5	2	100	0	50	48	0	0	52	1.00
48883--48950	17	3.8	17	78	14	57	47	1	1	50	1.19
48884--48962	2	42.0	2	69	16	53	44	1	1	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48884--48941	26	2.3	26	85	5	75	48	1	1	48	1.22
48942--48966	6	4.2	6	100	0	50	32	0	0	68	0.90
49916--49964	23	2.1	23	92	0	80	22	16	22	38	1.92
51280--51326	23	2.0	23	100	0	94	42	12	21	23	1.87
52214--52302	45	2.0	44	95	2	160	34	20	21	23	1.96
52610--53009	167	2.4	166	84	3	500	29	14	17	39	1.89
53728--53761	2	17.0	2	100	0	68	50	0	0	50	1.00
67401--67444	22	2.0	22	90	0	70	40	4	11	43	1.61
74199--74241	15	3.0	14	86	3	59	16	16	6	60	1.56
74199--74262	29	2.2	29	83	5	76	20	18	4	56	1.59
74227--74332	22	4.9	22	77	12	94	23	19	4	51	1.65
74263--74409	43	3.6	43	66	23	120	21	19	6	52	1.69
74349--74409	21	2.8	22	85	9	90	19	21	6	52	1.68
74349--74409	22	2.8	21	87	5	86	19	21	6	52	1.68
74409--74592	31	5.3	31	67	30	115	21	19	4	54	1.61
74316--74631	143	2.2	142	84	10	375	21	19	4	54	1.63
74385--74631	72	3.5	71	94	2	424	22	19	4	53	1.61
74457--74625	15	11.7	15	64	22	62	23	19	4	53	1.62
75206--75235	15	2.0	15	100	0	60	46	33	6	13	1.69
76691--76721	2	15.5	2	100	0	62	48	0	0	51	1.00
80078--80157	39	2.1	39	87	0	115	31	8	16	43	1.78
81553--81577	13	1.9	13	100	0	50	32	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82759--82863	33	3.2	33	77	5	104	26	9	20	43	1.82
102568--102614	22	2.1	23	84	4	60	76	2	17	4	1.04
102646--102680	18	1.9	19	88	11	56	57	5	11	25	1.56
102812--102881	35	1.9	36	88	5	106	52	8	20	18	1.71
103413--103493	34	2.5	32	82	7	99	60	7	14	17	1.56
103423--103508	34	2.5	34	84	3	109	56	10	15	17	1.65
104054--104141	38	2.4	36	89	9	142	53	10	17	19	1.71
102812--104376	628	2.5	635	81	7	1839	37	10	16	36	1.83
111141--111171	12	2.6	12	100	0	62	0	16	32	51	1.44

Tables:   1

The End!