Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009312.1 Corchorus capsularis cultivar CVL-1 contig09333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5403
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:5387 original size:26 final size:25

Alignment explanation


    Indices: 5348--5400  Score: 72
    Period size: 26  Copynumber: 2.1  Consensus size: 25

       5338 TTCTAGTGAT

                               *     
       5348 GAGAATAAGGAAGGAAAA-GAGGAG
          1 GAGAATAAGGAAGGAAAATAAGGAG

                                       
       5372 GAGAATCAAGGGAAGGAAAATAAGGAG
          1 GAGAAT-AA-GGAAGGAAAATAAGGAG

              
       5399 GA
          1 GA

       5401 ATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  24    6  0.24
  25    2  0.08
  26   10  0.40
  27    7  0.28

ACGTcount: A:0.53, C:0.02, G:0.40, T:0.06


Consensus pattern (25 bp):   
GAGAATAAGGAAGGAAAATAAGGAG
Done.