Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009316.1 Corchorus capsularis cultivar CVL-1 contig09337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4500

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
299--379
40
2.2
36
78
21
96
50
3
23
22
1.65
425--507
32
2.5
33
84
13
125
54
3
18
24
1.59
440--534
26
3.4
26
83
12
93
52
4
16
26
1.62
529--600
28
2.6
28
84
10
94
55
2
22
19
1.56
529--607
14
5.6
14
75
8
72
54
3
21
20
1.60
550--632
43
1.9
44
90
4
134
54
4
21
19
1.63
553--657
43
2.5
42
82
11
112
53
5
21
19
1.66
676--774
22
4.6
22
74
13
89
49
8
24
18
1.74
654--722
35
2.0
35
82
5
86
47
5
27
18
1.71
782--831
14
3.4
14
80
5
55
56
2
24
18
1.52
798--866
22
3.2
22
81
2
86
50
4
23
21
1.66

Tables:   1

The End!