Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009317.1 Corchorus capsularis cultivar CVL-1 contig09338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16555

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
189--244
28
2.0
28
85
0
76
28
14
12
44
1.81
849--1177
180
1.8
179
90
1
525
36
9
3
51
1.49
1771--1864
29
3.0
32
80
12
124
35
12
11
40
1.80
1771--1839
32
2.1
33
91
2
113
40
13
11
34
1.80
2009--2075
29
2.3
29
87
7
91
46
14
16
22
1.84
2859--2930
11
5.4
15
66
25
54
31
1
12
54
1.47
2863--2930
26
2.6
26
95
0
118
33
1
11
52
1.47
2940--2998
25
2.4
25
91
5
95
40
0
23
35
1.55
11739--11786
24
2.0
24
100
0
96
37
4
12
45
1.61
11840--11870
15
2.1
14
94
5
53
54
0
6
38
1.26
13123--13154
6
5.3
6
96
0
55
18
37
0
43
1.51

Tables:   1

The End!