Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009320.1 Corchorus capsularis cultivar CVL-1 contig09341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71047

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3145
850
3.7
851
91
1
4972
36
16
18
28
1.93
8464--8548
42
2.0
42
84
4
109
38
15
3
42
1.64
12128--12164
19
2.0
18
89
5
56
40
8
21
29
1.82
16372--16475
54
1.9
54
92
0
172
26
37
16
19
1.92
16382--16501
27
4.4
27
77
4
134
28
36
15
20
1.92
16959--17070
32
3.5
31
86
6
118
16
36
37
8
1.81
16981--17070
32
2.9
31
90
3
135
15
38
36
8
1.79
32026--32050
4
6.2
4
100
0
50
52
24
0
24
1.48
35571--35686
46
2.5
46
97
0
214
21
16
24
37
1.93
37358--37412
23
2.4
23
93
0
92
16
7
21
54
1.66
39062--39086
12
2.1
12
100
0
50
28
16
24
32
1.96
43245--43293
21
2.3
21
85
0
62
10
32
28
28
1.90
50448--51445
435
2.3
430
82
5
1172
43
13
13
30
1.82
58137--58283
75
2.0
75
98
0
285
29
21
19
28
1.98
59018--59186
83
2.0
83
100
0
338
34
13
20
31
1.90
63379--63422
9
4.9
9
83
8
54
0
20
2
77
0.88

Tables:   1

The End!