Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009322.1 Corchorus capsularis cultivar CVL-1 contig09343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54297

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7507--7539
14
2.4
14
100
0
66
42
6
12
39
1.67
9698--9767
33
2.1
33
94
0
122
45
5
22
25
1.74
11336--11718
109
3.5
109
95
3
664
48
1
11
38
1.50
11815--11839
13
1.9
13
100
0
50
48
0
20
32
1.50
23740--23792
26
2.0
26
100
0
106
60
5
18
15
1.54
26281--26306
13
2.0
13
100
0
52
53
15
23
7
1.67
27487--27536
17
2.9
17
75
18
59
26
14
12
48
1.78
28263--28417
78
2.0
78
94
0
274
40
10
5
43
1.63
30786--30847
27
2.3
27
86
5
81
38
3
25
32
1.72
32010--32076
31
2.1
32
86
2
91
20
20
8
49
1.76
33460--33504
23
2.0
23
95
4
83
24
8
4
62
1.43
33462--33512
23
2.2
23
85
0
66
23
7
7
60
1.50
34945--34977
14
2.4
14
100
0
66
42
0
15
42
1.46
35011--35035
5
5.0
5
100
0
50
60
0
0
40
0.97
35000--35047
15
3.0
16
79
14
55
54
4
0
41
1.20
35246--35280
18
1.9
18
100
0
70
28
25
17
28
1.97
38608--38698
44
2.1
44
97
0
173
17
29
13
39
1.88
41920--41968
25
2.0
25
87
0
71
44
22
18
14
1.85
45255--45281
14
1.9
14
100
0
54
33
0
44
22
1.53

Tables:   1

The End!