Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009323.1 Corchorus capsularis cultivar CVL-1 contig09344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29311

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3994--4037
21
2.0
22
95
4
81
29
25
13
31
1.94
10335--10963
22
29.0
22
68
12
200
35
15
10
38
1.81
10603--10725
45
2.8
44
83
3
140
37
13
8
39
1.77
10882--10932
19
2.6
20
87
6
77
25
17
13
43
1.86
11009--11361
22
15.9
22
72
11
204
34
15
9
40
1.79
11379--11439
24
2.7
23
78
9
63
36
16
9
37
1.82
11527--11613
22
4.0
21
76
7
84
35
17
11
35
1.86
11771--11813
19
2.2
20
84
16
54
62
2
6
27
1.33
12114--12180
31
2.1
32
78
10
75
46
4
14
34
1.65
12123--12186
31
2.1
31
85
5
85
48
4
17
29
1.67
12549--12609
31
2.0
31
90
0
95
36
21
26
16
1.94
12616--12673
31
1.9
30
86
6
82
32
24
25
17
1.96
12958--13004
22
2.1
22
100
0
94
59
0
8
31
1.27
13798--13841
19
2.4
19
88
11
65
15
9
20
54
1.68
26362--26400
10
4.0
10
86
3
53
38
0
0
61
0.96
27542--27594
22
2.4
22
100
0
106
32
20
24
22
1.98
28052--28403
156
2.3
151
79
8
381
33
19
14
32
1.93

Tables:   1

The End!