Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009325.1 Corchorus capsularis cultivar CVL-1 contig09346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50889
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Found at i:1192 original size:23 final size:22
Alignment explanation
Indices: 1113--1204 Score: 75
Period size: 23 Copynumber: 4.2 Consensus size: 22
1103 AGATTATTTT
* *
1113 AAAAATATTATAAGAGTTATTAA
1 AAAAATCTTATAAGA-TTAATAA
* *
1136 AGAAATCTTATAAG-TTACT-A
1 AAAAATCTTATAAGATTAATAA
1156 AAAAATAC--ACTAAGCATTAATAA
1 AAAAAT-CTTA-TAAG-ATTAATAA
*
1179 AAAAATCTTATAAGATTAATTA
1 AAAAATCTTATAAGATTAATAA
1201 AAAA
1 AAAA
1205 GTTATTAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
19 1 0.02
20 10 0.18
21 5 0.09
22 16 0.29
23 23 0.41
24 1 0.02
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAAAATCTTATAAGATTAATAA
Found at i:1277 original size:2 final size:2
Alignment explanation
Indices: 1270--1300 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1260 TTATAAAGTA
1270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1301 CATACTAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2902 original size:439 final size:441
Alignment explanation
Indices: 1610--3199 Score: 1803
Period size: 439 Copynumber: 3.6 Consensus size: 441
1600 ATAGATTATA
* * ** * ** * *
1610 AATCGAAATCACAAAATTTCAAAAGTA-TTTTTAGAATTGAAACATGAAAATTAGCTTTTGAGTT
1 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTT
* ** * * * * *
1674 TTTCATGAAGGTTGTAGATCATAAAATTACTTTTTAGTAGACACCTT-AATTACCTTAATTGGAC
66 CTTCATGAAAATTGTAGATCATGAAATTACCTTTTAATAGACA-CTTGAATCACCTTAATCGGAC
* * * *
1738 AAATAGAACAAAGAAAATA-AAAAA-AAA--TGAAGCGTTAAATCGAGTGAGATAGAATTTGTAA
130 AAATAG-AGAAA-AAAATACAAAAATAAATGTGAAGCGTTAAATCG-TTAAGATATAATTTGTAA
* * * ** * * * *
1799 AGAACTAAGTAACATAAAATATAAAATAGAAAAGTATGAGGGT--TTTGATAACTAATTCAAATA
192 AGGACTAAATAGCAT---A-A-AGCAT-GAAAAGTATGAGGATCATTAGATAAATAATCCAAATA
* * * * *
1862 ATAAAATATTTCTTAATGGATATCTTGAAACATAAAAATTCCCTCTTGAACCCTTCATGAAACTC
251 AGAAAATATTTGTTAATGGAGATCTTG-AACATAAAAACTCCCTTTTGAACCCTTCATGAAACTC
* * * * * * *
1927 GTAGACTCGAA-TTAACTTTCGGGTTCTTCATGAAAGTCGTAGATCATACAGTAACCTTTTAACC
315 GAAGA-TCAAATTTAGCTTTCGGGTACTTCATGAAAGTCGTAAATCATGCAATAACCTTTTAACC
* * * * * * * *
1991 GACACTTGAATAACTTTAATTGGACATGTGGATC-GAAAATTATATGGTATTAAATAGACCAAC
379 GACACTTCAATAACTTCAATCGGACATGTGGA-CAAAAAATTATAAGATATTAAATTGACCGAC
** * * * * * * * *
2054 AATTGAAACGACCAAATTTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTTGCTTTTGAGTA
1 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTT
* * *
2119 CTTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATCAACTTAATCGGACA
66 CTTCATGAAAATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCACCTTAATCGGACA
* * * * * * *
2184 AATAGA-ACAAAGAATAAAAAAATAAATCTTAAACGTTAGA---TTAAGATAAAATTTGTAAAGG
131 AATAGAGA-AAAAAATACAAAAATAAATGTGAAGCGTTAAATCGTTAAGATATAATTTGTAAAGG
* * * * * *
2245 ACTAAGTAGTATAAAG-TTGAGAAA-TATGAGGGTCATTTGATAAATAATCCAAATAAGAAAATG
195 ACTAAATAGCATAAAGCATGA-AAAGTATGAGGATCATTAGATAAATAATCCAAATAAGAAAATA
*
2308 TTTGTTAATGGAGATTTTGAACATAAAAACTCCCTTTTGAACCCTTCATGAAACTCGTAA-ATCA
259 TTTGTTAATGGAGATCTTGAACATAAAAACTCCCTTTTGAACCCTTCATGAAACTCG-AAGATCA
* ** * * *
2372 AATTTAGCTTTCGGGTCCTTCACAAAAGTCGTAAGTCATGTAATAACCTTTTGACCGACACTTCA
323 AATTTAGCTTTCGGGTACTTCATGAAAGTCGTAAATCATGCAATAACCTTTTAACCGACACTTCA
*
2437 ATAACTTCAATCGGACATGTGGACAAAAAATTATAAGATATTAAATTGACCGGC
388 ATAACTTCAATCGGACATGTGGACAAAAAATTATAAGATATTAAATTGACCGAC
*
2491 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCATTTGAGTT
1 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTT
*
2556 CTTCAT-AAATATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCACCTTAATTGGAC
66 CTTCATGAAA-ATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCACCTTAATCGGAC
* * *
2620 AAATAGGGGAAAAAATACAAAAATAAATGTGAACGCGTTAAATCGTTCAAGCTATAA-TTGTAAA
130 AAATAGAGAAAAAAATACAAAAATAAATGTGAA-GCGTTAAATCGTT-AAGATATAATTTGTAAA
*
2684 GGACTAAATAGCATAAAGCAT-AAAAGTATGAGGATCATTAGATAAATAATCCAACTAA-AAAA-
193 GGACTAAATAGCATAAAGCATGAAAAGTATGAGGATCATTAGATAAATAATCCAAATAAGAAAAT
2746 ATTTGTTAATGGAGATCTTGAACATAAAAACTCCCTTTTGAACCCTTCATGAAACTCGAAGATCA
258 ATTTGTTAATGGAGATCTTGAACATAAAAACTCCCTTTTGAACCCTTCATGAAACTCGAAGATCA
* * * *
2811 AATTTAGCTTTCGGGTACTTCATGAAAGTCATAAATCATGCAATAACCTTCTAATCAACACTTCA
323 AATTTAGCTTTCGGGTACTTCATGAAAGTCGTAAATCATGCAATAACCTTTTAACCGACACTTCA
* *
2876 ATAACTTCAATCGGACATGCGGACAAAAAATTATACGATATTAAATTGACCGAC
388 ATAACTTCAATCGGACATGTGGACAAAAAATTATAAGATATTAAATTGACCGAC
* **
2930 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAAAATCAAAATGTTAAAATTGGCTTTTGAGTT
1 AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTT
*
2995 CTTCATGAAAATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCATCTTAATCGGACA
66 CTTCATGAAAATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCACCTTAATCGGACA
* * * * **
3060 AATAG-GAAAAAAATACAATAATAAATGCGAATGCATTAAATCGTCCAACCTATAA-TTGTAAAG
131 AATAGAGAAAAAAATACAAAAATAAATGTGAA-GCGTTAAATCGT-TAAGATATAATTTGTAAAG
* *
3123 GACTAAATAGCATTAAGCAT-AAAAATATGAGGATCATTAGATAAATAATCCAACA-AA-AAAAT
194 GACTAAATAGCATAAAGCATGAAAAGTATGAGGATCATTAGATAAATAATCCAA-ATAAGAAAAT
* *
3185 ATTAGTTTATGGAGA
258 ATTTGTTAATGGAGA
3200 ATGGGACCCA
Statistics
Matches: 991, Mismatches: 128, Indels: 59
0.84 0.11 0.05
Matches are distributed among these distances:
436 19 0.02
437 272 0.27
438 157 0.16
439 305 0.31
440 11 0.01
441 55 0.06
442 8 0.01
443 33 0.03
444 29 0.03
445 93 0.09
447 9 0.01
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (441 bp):
AATCAAAACCACAAAATTTCGGAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTT
CTTCATGAAAATTGTAGATCATGAAATTACCTTTTAATAGACACTTGAATCACCTTAATCGGACA
AATAGAGAAAAAAATACAAAAATAAATGTGAAGCGTTAAATCGTTAAGATATAATTTGTAAAGGA
CTAAATAGCATAAAGCATGAAAAGTATGAGGATCATTAGATAAATAATCCAAATAAGAAAATATT
TGTTAATGGAGATCTTGAACATAAAAACTCCCTTTTGAACCCTTCATGAAACTCGAAGATCAAAT
TTAGCTTTCGGGTACTTCATGAAAGTCGTAAATCATGCAATAACCTTTTAACCGACACTTCAATA
ACTTCAATCGGACATGTGGACAAAAAATTATAAGATATTAAATTGACCGAC
Found at i:7330 original size:54 final size:56
Alignment explanation
Indices: 7226--7336 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 56
7216 AATTAATAAA
*
7226 AAAGTTTAATAACTAAAAAGAATATTAATTAAAAATTTATTATACCATAATACTAAG
1 AAAGTTTAATAACTAAAAAGAATATTAATTAAAAA-TAATTATACCATAATACTAAG
** * *
7283 AAAGTTTAATGTCTAAAAAG-ATATTAATTAAAAA-AATTATACTATAATAGTAAG
1 AAAGTTTAATAACTAAAAAGAATATTAATTAAAAATAATTATACCATAATACTAAG
7337 GGTATTTTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 17 0.35
56 14 0.29
57 18 0.37
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.33
Consensus pattern (56 bp):
AAAGTTTAATAACTAAAAAGAATATTAATTAAAAATAATTATACCATAATACTAAG
Found at i:8988 original size:18 final size:18
Alignment explanation
Indices: 8965--9000 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8955 GCAAACCCTC
8965 TTTTGGAAATCCCTCTAT
1 TTTTGGAAATCCCTCTAT
* *
8983 TTTTGGACATTCCTCTAT
1 TTTTGGAAATCCCTCTAT
9001 CCAAAATTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.11, T:0.47
Consensus pattern (18 bp):
TTTTGGAAATCCCTCTAT
Found at i:30152 original size:15 final size:15
Alignment explanation
Indices: 30132--30161 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
30122 TTTTGTAATG
30132 TCACACTTTTCTTGT
1 TCACACTTTTCTTGT
*
30147 TCACACTTTTTTTGT
1 TCACACTTTTCTTGT
30162 AAAATCAGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.07, T:0.57
Consensus pattern (15 bp):
TCACACTTTTCTTGT
Found at i:42277 original size:2 final size:2
Alignment explanation
Indices: 42270--42301 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
42260 TTGGAATCTC
42270 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42302 GTTATATTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:44587 original size:13 final size:13
Alignment explanation
Indices: 44569--44598 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
44559 TTACATTTTT
44569 ACAAATTTTAGTA
1 ACAAATTTTAGTA
44582 ACAAATTTTAGTA
1 ACAAATTTTAGTA
44595 ACAA
1 ACAA
44599 TTCAATAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (13 bp):
ACAAATTTTAGTA
Found at i:45203 original size:21 final size:22
Alignment explanation
Indices: 45166--45206 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
45156 TCAATTTTTT
45166 TATGTATGATTACTAAAAATAA
1 TATGTATGATTACTAAAAATAA
*
45188 TATGTA-GATTATTAAAAAT
1 TATGTATGATTACTAAAAAT
45207 TAGTTTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (22 bp):
TATGTATGATTACTAAAAATAA
Found at i:45444 original size:239 final size:233
Alignment explanation
Indices: 44972--45444 Score: 570
Period size: 239 Copynumber: 2.0 Consensus size: 233
44962 TAGTAATCTG
* *
44972 TCATCAAATAATATGAAGAATGTTTCCAGTTATCCTTTATTTAAAAAGAAGTAGTGGTTATCAAA
1 TCATCAAATAATATGAAGAATATTTCCAGTTATCCTTTATTTAAAAAAAAGTAGTGGTTATCAAA
* *
45037 AAAGTTGAGGTAACAATTTTTTTTTATCAAAGGTTACCAGAACGTCTATAGAGGTTATAATAAAA
66 AAAGTTGAGGTAACAAATTTTTTTTATCAAAGGTTACCAGAACATCTATAGAGGTTATAATAAAA
* *
45102 AAAATCAGTGAACAAAAAGATTGAGATGCTATTAACTAATTTTGTCACTTTACATCAATTTTTTT
131 AAAATCAGTAAACAAAAAGATTGAGACGCTATTAAC----TTTG-CAC--TACATCAATTTTTTT
* *
45167 ATGTATGATTACTAAAAATAATATGTAGATTATTAAAAATTAGTT
189 ATATATGATTACAAAAAATAATATGTAGATTATTAAAAATTAGTT
45212 TCATCAAAT-AT-TGAAGAATATTTCCAGTTATCCTTTATTTAAAAAAAAAGTAGTGGTTATCAA
1 TCATCAAATAATATGAAGAATATTTCCAGTTATCCTTTATTT-AAAAAAAAGTAGTGGTTATCAA
*
45275 AAAAGTTGAGGTAACAAATTTTTTTTATCAAAGGTTA-CTGAATCATCTATAGAGGTTATAATAA
65 AAAAGTTGAGGTAACAAATTTTTTTTATCAAAGGTTACCAGAA-CATCTATAGAGGTTATAAT--
* *
45339 AAAAAAAAGAAAAGAATCTGTAAACAAAAAGATTGAGACGCTATTAAC-TTG-AC-ACA-CCATT
127 ------AA-AAAA-AATCAGTAAACAAAAAGATTGAGACGCTATTAACTTTGCACTACATCAATT
45400 TTTTTACCTATATGATTACAAAAAACT-ATA-G-AGATTATTTAAAAA
184 TTTTTA--TATATGATTACAAAAAA-TAATATGTAGATTA-TTAAAAA
45445 ATTACAAATT
Statistics
Matches: 206, Mismatches: 11, Indels: 33
0.82 0.04 0.13
Matches are distributed among these distances:
238 48 0.23
239 88 0.43
240 27 0.13
241 1 0.00
242 2 0.01
244 3 0.01
247 2 0.01
248 4 0.02
249 31 0.15
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (233 bp):
TCATCAAATAATATGAAGAATATTTCCAGTTATCCTTTATTTAAAAAAAAGTAGTGGTTATCAAA
AAAGTTGAGGTAACAAATTTTTTTTATCAAAGGTTACCAGAACATCTATAGAGGTTATAATAAAA
AAAATCAGTAAACAAAAAGATTGAGACGCTATTAACTTTGCACTACATCAATTTTTTTATATATG
ATTACAAAAAATAATATGTAGATTATTAAAAATTAGTT
Found at i:45925 original size:46 final size:48
Alignment explanation
Indices: 45874--45964 Score: 141
Period size: 46 Copynumber: 1.9 Consensus size: 48
45864 AAAAAACGTC
* *
45874 ATAGTGCTATCAAGAAATAAAGG-TT-TCTAATCCCTTTATGTTAATT
1 ATAGTGCTATCAAGAAACAAAGGTTTATATAATCCCTTTATGTTAATT
*
45920 ATAGTGCTATCAAGAAACAATGGTTTATATAATCCCTTTATGTTA
1 ATAGTGCTATCAAGAAACAAAGGTTTATATAATCCCTTTATGTTA
45965 GCATCTTATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 21 0.52
47 2 0.05
48 17 0.43
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (48 bp):
ATAGTGCTATCAAGAAACAAAGGTTTATATAATCCCTTTATGTTAATT
Found at i:47437 original size:166 final size:164
Alignment explanation
Indices: 46969--47451 Score: 587
Period size: 166 Copynumber: 2.9 Consensus size: 164
46959 GTCATTTGTA
* * * * *
46969 AATTGAGAAATTA-TCAAAAAGTTTAGTTATTTAATCCCCTCAAGAATAAAAAATTAGGATATTT
1 AATTGAGAAATGACT-AAAAAG-TTAATTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATTT
* * * * *
47033 AAGTAATCTGTTAAGTAGGTAAAGACGAAAAAGATTAGTTCTCTAGCTCATCATCAATCCTTGAT
64 AAGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAGCTCCTCATCAAT-CTTGGT
* *
47098 GGGGATCTTTTATTAATTCCACTATTCTATTCAAGTC
128 GGGGATCTTTTAGTAATTCCACTATTCTATTAAAGTC
* * * *
47135 CATTAAGAAATGACCAAAAAGATTACTTATTTAAT-CCCTCAAGAATCAAAAGTTAGGACATTTA
1 AATTGAGAAATGACTAAAAAG-TTAATTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATTTA
* * * * * * *
47199 AGTAATCTGCCAAGTAGGAAAAGATGAAAAAAATAAGTTCTCTAACT-CTAAAAGCAAGCCTTGG
65 AGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAGCTCCT--CATCAA-TCTTGG
*
47263 TAGGGATCTTTTAGTAATTCCACTACTT-TATTAAAGTC
127 TGGGGATCTTTTAGTAATTCCACTA-TTCTATTAAAGTC
*
47301 AATTGAGAAATGACTAAAAAGTCTAATTATTTAATCCCCTCAAGAATCAAAAGTTATGACATTTA
1 AATTGAGAAATGACTAAAAAGT-TAATTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATTTA
* * * *
47366 AGTAATCTGTCAAGTTGGAAAAGACGAAAAAAATTAGTTCTCTCGCTCCTCATTAATCTGGGGTG
65 AGTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAGCTCCTCATCAATCT-TGGTG
47431 GGGATCTTTTAGTAATTCCAC
129 GGGATCTTTTAGTAATTCCAC
47452 ATGTTTATTC
Statistics
Matches: 267, Mismatches: 41, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
164 1 0.00
165 69 0.26
166 124 0.46
167 71 0.27
168 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (164 bp):
AATTGAGAAATGACTAAAAAGTTAATTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATTTAA
GTAATCTGTCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAGCTCCTCATCAATCTTGGTGGG
GATCTTTTAGTAATTCCACTATTCTATTAAAGTC
Found at i:47484 original size:2 final size:2
Alignment explanation
Indices: 47477--47502 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47467 ATATGTAGTG
47477 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
47503 AAAACTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:48140 original size:44 final size:45
Alignment explanation
Indices: 48091--48178 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
48081 GATTACTACT
48091 CCAGCTCATCATTAA-TCCGGGTAGGGATCTTTTAGTAATTCCAC
1 CCAGCTCATCATTAATTCCGGGTAGGGATCTTTTAGTAATTCCAC
*
48135 CCAGCTCATCATTAATTCGGGGTAGGGATCTTTTAGTAATTCCA
1 CCAGCTCATCATTAATTCCGGGTAGGGATCTTTTAGTAATTCCA
48179 TTACTCTATT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 15 0.36
45 27 0.64
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (45 bp):
CCAGCTCATCATTAATTCCGGGTAGGGATCTTTTAGTAATTCCAC
Done.