Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009328.1 Corchorus capsularis cultivar CVL-1 contig09349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16878

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3545--3738
32
6.4
32
70
16
144
25
27
15
30
1.96
3415--3830
150
2.8
149
88
1
600
27
28
14
29
1.95
5547--5671
47
2.6
48
96
2
225
42
20
12
25
1.86
7818--7950
36
3.7
36
92
2
230
28
23
11
36
1.89
7797--7947
36
4.2
37
89
5
220
28
21
11
39
1.87
7959--8224
37
7.2
37
92
0
397
22
30
8
38
1.84
8234--8332
36
2.8
36
81
9
105
25
11
12
51
1.72
8380--8977
76
7.9
76
95
0
1047
24
20
10
44
1.83
9991--10131
41
3.5
40
91
0
201
28
23
11
36
1.89
16412--16446
13
2.7
13
95
0
61
20
5
8
65
1.40
16443--16476
6
5.5
6
93
6
59
32
0
14
52
1.42

Tables:   1

The End!