Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009334.1 Corchorus capsularis cultivar CVL-1 contig09355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70630
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1852 original size:32 final size:32
Alignment explanation
Indices: 1783--1878 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
1773 GGACTTCACC
* *
1783 AAATAGCGGCGTCTAGCTT-ATTGAGACGCCGCT
1 AAATAGCGGCGTATAG-TTCATT-AGACGCCGCG
* *
1816 AAATAGCGGCGT-TGGTTTCATTAGGCGCCGCG
1 AAATAGCGGCGTATAG-TTCATTAGACGCCGCG
* *
1848 AAATAGTGGCGTATTGTTCATTAGACGCCGC
1 AAATAGCGGCGTATAGTTCATTAGACGCCGC
1879 TATTTTGCTG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
32 37 0.69
33 17 0.31
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (32 bp):
AAATAGCGGCGTATAGTTCATTAGACGCCGCG
Found at i:5100 original size:14 final size:14
Alignment explanation
Indices: 5081--5111 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
5071 GGACAGCTAT
5081 GAATTTTCTTATAC
1 GAATTTTCTTATAC
5095 GAATTTTCTTATAC
1 GAATTTTCTTATAC
5109 GAA
1 GAA
5112 AACCCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (14 bp):
GAATTTTCTTATAC
Found at i:11271 original size:16 final size:16
Alignment explanation
Indices: 11250--11281 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11240 CCCTTTTCAG
11250 TAGGATTTATAAGCTA
1 TAGGATTTATAAGCTA
11266 TAGGATTTATAAGCTA
1 TAGGATTTATAAGCTA
11282 GGCCAAACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
TAGGATTTATAAGCTA
Found at i:13114 original size:76 final size:76
Alignment explanation
Indices: 12998--13146 Score: 228
Period size: 76 Copynumber: 2.0 Consensus size: 76
12988 GATTTTTGCG
*
12998 GGAGGTCCGGGTTCGAATCCTGGGATAGGCGAGATGGGATTATCGAATTCTAGGATGGGCGGGGT
1 GGAGGTCCGGGTTCGAATCCTGGGATAGGCGAGATGGGATTATCGAATCCTAGGATGGGCGGGGT
*
13063 GGGATTATACA
66 GGAATTATACA
* * * *
13074 GGAGGTCCCGGGTTCGAATCCT-GGATAGGTGGGGTGGGATTATCGAATCCTAGGATGGGTGGGG
1 GGAGGT-CCGGGTTCGAATCCTGGGATAGGCGAGATGGGATTATCGAATCCTAGGATGGGCGGGG
13138 TGGAATTAT
65 TGGAATTAT
13147 GGAAAAGGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 51 0.77
77 15 0.23
ACGTcount: A:0.21, C:0.13, G:0.42, T:0.25
Consensus pattern (76 bp):
GGAGGTCCGGGTTCGAATCCTGGGATAGGCGAGATGGGATTATCGAATCCTAGGATGGGCGGGGT
GGAATTATACA
Found at i:13137 original size:30 final size:29
Alignment explanation
Indices: 13087--13146 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
13077 GGTCCCGGGT
*
13087 TCGAATCCTGGATAGGTGGGGTGGGATTA
1 TCGAATCCTGGATAGGTGGGGTGGAATTA
*
13116 TCGAATCCTAGGATGGGTGGGGTGGAATTA
1 TCGAATCCT-GGATAGGTGGGGTGGAATTA
13146 T
1 T
13147 GGAAAAGGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.22, C:0.10, G:0.40, T:0.28
Consensus pattern (29 bp):
TCGAATCCTGGATAGGTGGGGTGGAATTA
Found at i:15251 original size:22 final size:22
Alignment explanation
Indices: 15226--15544 Score: 165
Period size: 22 Copynumber: 14.6 Consensus size: 22
15216 ACAATCAAAC
*
15226 CAAAATTACATAGGAAGGTTAT
1 CAAAATTTCATAGGAAGGTTAT
* **
15248 CAAAATTTCATATGAAAATTAT
1 CAAAATTTCATAGGAAGGTTAT
*
15270 CAAAACTTCATAGTGTAA--TTAT
1 CAAAATTTCATAG-G-AAGGTTAT
** *
15292 CAAAATTTCATACAAAGGTTAC
1 CAAAATTTCATAGGAAGGTTAT
* ** *
15314 CAAATTTTCATAAAAAGATTAT
1 CAAAATTTCATAGGAAGGTTAT
* * * *
15336 TAAAATTTCCTAGGGAGGTTAA
1 CAAAATTTCATAGGAAGGTTAT
* * * *
15358 CAAAATTTTATACGAAAGCTAT
1 CAAAATTTCATAGGAAGGTTAT
* * ***
15380 CGAAATTTTATAGTTTGGTTAT
1 CAAAATTTCATAGGAAGGTTAT
* *
15402 CAAAATTTCATAAGAAGGTTAA
1 CAAAATTTCATAGGAAGGTTAT
15424 CAAAATTTCATAGGAAGGGAATTTAT
1 CAAAATTTCATAGGAA-GG---TTAT
*
15450 CAAAATTT-AT-----GCTTAT
1 CAAAATTTCATAGGAAGGTTAT
* * *
15466 CAAAATTTCCTATGGACGTTTA-
1 CAAAATTTCATA-GGAAGGTTAT
15488 CAAAATTTCATAAGG-AGGTTAT
1 CAAAATTTCAT-AGGAAGGTTAT
* * *
15510 GAAAATTTTAT-GTACAGGTTAT
1 CAAAATTTCATAGGA-AGGTTAT
*
15532 CAAAATTACATAG
1 CAAAATTTCATAG
15545 AGAGGATATC
Statistics
Matches: 219, Mismatches: 58, Indels: 39
0.69 0.18 0.12
Matches are distributed among these distances:
16 12 0.05
17 1 0.00
19 1 0.00
20 3 0.01
21 4 0.02
22 174 0.79
23 9 0.04
24 2 0.01
25 2 0.01
26 11 0.05
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (22 bp):
CAAAATTTCATAGGAAGGTTAT
Found at i:15711 original size:44 final size:43
Alignment explanation
Indices: 15643--15757 Score: 106
Period size: 44 Copynumber: 2.7 Consensus size: 43
15633 TATAATGTTA
* ** *
15643 TTATCAAAATTTTATAGGGAGATTATCAAAATTTCACACTAAGG
1 TTATCAAAATTTCATAATGAGATTATCAAAATTTCACA-GAAGG
* * * * *
15687 TTATCAAAATTTCATAATGTGATTATTAAATTTTCATAGGAGG
1 TTATCAAAATTTCATAATGAGATTATCAAAATTTCACAGAAGG
**
15730 TTATTGAAATTTCATAATGA-AGTTATCA
1 TTATCAAAATTTCATAATGAGA-TTATCA
15758 GCTTTTCACA
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.02
43 25 0.44
44 31 0.54
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (43 bp):
TTATCAAAATTTCATAATGAGATTATCAAAATTTCACAGAAGG
Found at i:15712 original size:22 final size:22
Alignment explanation
Indices: 15642--15757 Score: 83
Period size: 22 Copynumber: 5.3 Consensus size: 22
15632 ATATAATGTT
* **
15642 ATTATCAAAATTTTATAGGGAG
1 ATTATCAAAATTTCATAATGAG
* * *
15664 ATTATCAAAATTTCACACTAAG
1 ATTATCAAAATTTCATAATGAG
* *
15686 GTTATCAAAATTTCATAATGTG
1 ATTATCAAAATTTCATAATGAG
* * *
15708 ATTATTAAATTTTCAT-AGGAG
1 ATTATCAAAATTTCATAATGAG
* **
15729 GTTATTGAAATTTCATAATGA-
1 ATTATCAAAATTTCATAATGAG
15750 AGTTATCA
1 A-TTATCA
15758 GCTTTTCACA
Statistics
Matches: 70, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
21 16 0.23
22 54 0.77
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.39
Consensus pattern (22 bp):
ATTATCAAAATTTCATAATGAG
Found at i:15719 original size:21 final size:22
Alignment explanation
Indices: 15693--15749 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
15683 AAGGTTATCA
*
15693 AAATTTCATAATGTGATTATT-
1 AAATTTCATAATGAGATTATTG
* *
15714 AAATTTTCAT-AGGAGGTTATTG
1 AAA-TTTCATAATGAGATTATTG
15736 AAATTTCATAATGA
1 AAATTTCATAATGA
15750 AGTTATCAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (22 bp):
AAATTTCATAATGAGATTATTG
Found at i:15755 original size:65 final size:66
Alignment explanation
Indices: 15634--15757 Score: 146
Period size: 65 Copynumber: 1.9 Consensus size: 66
15624 TACCAATTAT
* *
15634 ATAATGTTATTATCAAAATTTTATAGGGAGATTATCAAAATTTCACACTAAGGTTATCAAAATTT
1 ATAATGTGATTATCAAAATTTTATAGGGAGATTATCAAAATTTCACAATAAGGTTATCAAAATTT
15699 C
66 C
* * ** *
15700 ATAATGTGATTAT-TAAATTTTCATA-GGAGGTTATTGAAATTTCATAATGAA-GTTATCA
1 ATAATGTGATTATCAAAATTTT-ATAGGGAGATTATCAAAATTTCACAAT-AAGGTTATCA
15758 GCTTTTCACA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
65 32 0.65
66 17 0.35
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (66 bp):
ATAATGTGATTATCAAAATTTTATAGGGAGATTATCAAAATTTCACAATAAGGTTATCAAAATTT
C
Found at i:20546 original size:12 final size:13
Alignment explanation
Indices: 20524--20566 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
20514 CTCTCTGAGG
20524 TTTACTTTTTATT
1 TTTACTTTTTATT
20537 TTTA-TTTTTATTT
1 TTTACTTTTTA-TT
* *
20550 TTTTCTTTTTCTT
1 TTTACTTTTTATT
20563 TTTA
1 TTTA
20567 GTTCTCAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 6 0.24
13 14 0.56
14 5 0.20
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTACTTTTTATT
Found at i:20558 original size:20 final size:20
Alignment explanation
Indices: 20529--20566 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20519 TGAGGTTTAC
20529 TTTTTATTTTTATTTTTATT
1 TTTTTATTTTTATTTTTATT
* *
20549 TTTTTCTTTTTCTTTTTA
1 TTTTTATTTTTATTTTTA
20567 GTTCTCAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTATT
Found at i:21061 original size:120 final size:120
Alignment explanation
Indices: 20848--21131 Score: 437
Period size: 120 Copynumber: 2.4 Consensus size: 120
20838 AGAGAAAATA
** * *
20848 TCATGGCTCAGATTGGT-TTGTTCGAAGAAAGACTTGGGGGGCAAAACCAACAGCTGCTTGGCGC
1 TCATGGCTCAGATTGGTCTCATT-GATGAAAGACTTGGGGGGCAAAACCAACAACTGCTTGGCGC
*
20912 CCAGCCCGGTGTTCTGCCTCTTCAACAAGTCAACCATCAGGTGAACAACCAACAAG
65 CCAGCCCGGTGCTCTGCCTCTTCAACAAGTCAACCATCAGGTGAACAACCAACAAG
* *
20968 TCATGGCTCAGATTAGTCTCATTGATGAAAGACTTGGGGGGCAAAACCAACAACTGCTTGGTGCC
1 TCATGGCTCAGATTGGTCTCATTGATGAAAGACTTGGGGGGCAAAACCAACAACTGCTTGGCGCC
* **
21033 CAGCTCGGTGCTCTGCCTCTTCAACAAGTCAATTATCAGGTGAACAACCAACAAG
66 CAGCCCGGTGCTCTGCCTCTTCAACAAGTCAACCATCAGGTGAACAACCAACAAG
*
21088 TCATGGCTCCA-ATTGGTCTCATCGATGAAAGACTTGGGGGGCAA
1 TCATGGCT-CAGATTGGTCTCATTGATGAAAGACTTGGGGGGCAA
21132 GGACTCGAGG
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
120 145 0.97
121 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (120 bp):
TCATGGCTCAGATTGGTCTCATTGATGAAAGACTTGGGGGGCAAAACCAACAACTGCTTGGCGCC
CAGCCCGGTGCTCTGCCTCTTCAACAAGTCAACCATCAGGTGAACAACCAACAAG
Found at i:23848 original size:21 final size:21
Alignment explanation
Indices: 23813--23867 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
23803 AGAACAGCTC
* *
23813 ATGGAGTCGACTGCTCTAA-TA
1 ATGGAGTCAAATGCTC-AACTA
23834 ATGGAGTCAAATGCTCAACTTA
1 ATGGAGTCAAATGCTCAAC-TA
23856 A-GGAGTCAAATG
1 ATGGAGTCAAATG
23868 ACTTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.83
22 3 0.10
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (21 bp):
ATGGAGTCAAATGCTCAACTA
Found at i:23875 original size:21 final size:22
Alignment explanation
Indices: 23836--23891 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
23826 CTCTAATAAT
23836 GGAGTCAAATG-CTCAACTTAA
1 GGAGTCAAATGACTCAACTTAA
*
23857 GGAGTCAAATGACT-TACTTAA
1 GGAGTCAAATGACTCAACTTAA
*
23878 AGAG-CAAATGACTC
1 GGAGTCAAATGACTC
23892 GAGCCAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.29
21 20 0.65
22 2 0.06
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (22 bp):
GGAGTCAAATGACTCAACTTAA
Found at i:30319 original size:27 final size:28
Alignment explanation
Indices: 30284--30386 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 28
30274 GGCCAAGGAG
30284 GAGAGACTTGA-ATTGTGCTCTCCATGA
1 GAGAGACTTGACATTGTGCTCTCCATGA
* * *
30311 GAGATACTTGACATT-TGCTGGTGGCCAAGGA
1 GAGAGACTTGACATTGTGCT-CT--CC-ATGA
30342 GGAGAGACTTGA-ATTGTGCTCTCCATGA
1 -GAGAGACTTGACATTGTGCTCTCCATGA
*
30370 GAGATACTTGACATTGT
1 GAGAGACTTGACATTGT
30387 TGAGTTTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
27 24 0.39
28 12 0.20
29 2 0.03
30 2 0.03
31 7 0.11
32 14 0.23
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (28 bp):
GAGAGACTTGACATTGTGCTCTCCATGA
Found at i:30353 original size:32 final size:31
Alignment explanation
Indices: 30271--30361 Score: 102
Period size: 27 Copynumber: 3.0 Consensus size: 31
30261 AGCCAAAGCT
30271 TGTGGCCAAGGAGGAGAGACTTGAATTGTGC
1 TGTGGCCAAGGAGGAGAGACTTGAATTGTGC
* * *
30302 TCT--CC-ATGA-GAGATACTTGACATT-TGC
1 TGTGGCCAAGGAGGAGAGACTTGA-ATTGTGC
30329 TGGTGGCCAAGGAGGAGAGACTTGAATTGTGC
1 T-GTGGCCAAGGAGGAGAGACTTGAATTGTGC
30361 T
1 T
30362 CTCCATGAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
27 14 0.30
28 7 0.15
29 2 0.04
30 2 0.04
31 8 0.17
32 14 0.30
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.26
Consensus pattern (31 bp):
TGTGGCCAAGGAGGAGAGACTTGAATTGTGC
Found at i:30364 original size:59 final size:59
Alignment explanation
Indices: 30272--30384 Score: 226
Period size: 59 Copynumber: 1.9 Consensus size: 59
30262 GCCAAAGCTT
30272 GTGGCCAAGGAGGAGAGACTTGAATTGTGCTCTCCATGAGAGATACTTGACATTTGCTG
1 GTGGCCAAGGAGGAGAGACTTGAATTGTGCTCTCCATGAGAGATACTTGACATTTGCTG
30331 GTGGCCAAGGAGGAGAGACTTGAATTGTGCTCTCCATGAGAGATACTTGACATT
1 GTGGCCAAGGAGGAGAGACTTGAATTGTGCTCTCCATGAGAGATACTTGACATT
30385 GTTGAGTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (59 bp):
GTGGCCAAGGAGGAGAGACTTGAATTGTGCTCTCCATGAGAGATACTTGACATTTGCTG
Found at i:30419 original size:1 final size:1
Alignment explanation
Indices: 30413--30437 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
30403 GCGGGAGGAA
30413 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
30438 AGTATTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:32100 original size:44 final size:41
Alignment explanation
Indices: 32033--32121 Score: 124
Period size: 44 Copynumber: 2.1 Consensus size: 41
32023 TTGTCGAATG
32033 ATATTTAAGAATGTATTTCTTAAAGGATTTATTTTTGAAGA
1 ATATTTAAGAATGTATTTCTTAAAGGATTTATTTTTGAAGA
* * *
32074 ATATTTAAGAATATTGTATTTTTTAAAGGATTTATTTTTTAAGG
1 ATATTTAAG-A-A-TGTATTTCTTAAAGGATTTATTTTTGAAGA
32118 ATAT
1 ATAT
32122 ATTATGATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 9 0.21
42 1 0.02
43 1 0.02
44 31 0.74
ACGTcount: A:0.36, C:0.01, G:0.13, T:0.49
Consensus pattern (41 bp):
ATATTTAAGAATGTATTTCTTAAAGGATTTATTTTTGAAGA
Found at i:32111 original size:16 final size:15
Alignment explanation
Indices: 32090--32124 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32080 AAGAATATTG
*
32090 TATTTTTTAAAGGATT
1 TATTTTTT-AAGGATA
32106 TATTTTTTAAGGATA
1 TATTTTTTAAGGATA
32121 TATT
1 TATT
32125 ATGATGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (15 bp):
TATTTTTTAAGGATA
Found at i:33434 original size:21 final size:22
Alignment explanation
Indices: 33408--33452 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
33398 GAATTCTGGA
33408 TTGCTAAACACCGCCCCCC-TT
1 TTGCTAAACACCGCCCCCCATT
*
33429 TTGCTAAATACCGCCCCCCATT
1 TTGCTAAACACCGCCCCCCATT
33451 TT
1 TT
33453 ACACTTTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.20, C:0.42, G:0.09, T:0.29
Consensus pattern (22 bp):
TTGCTAAACACCGCCCCCCATT
Found at i:33760 original size:22 final size:23
Alignment explanation
Indices: 33708--33761 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
33698 AAATTAATTT
*
33708 TTAATTAATTAGTATTTAATTAC
1 TTAATTTATTAGTATTTAATTAC
* *
33731 TTAGTTTATTAGT-TTTAATTAG
1 TTAATTTATTAGTATTTAATTAC
33753 TTAATTTAT
1 TTAATTTAT
33762 GATTAACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TTAATTTATTAGTATTTAATTAC
Found at i:34009 original size:21 final size:21
Alignment explanation
Indices: 33968--34012 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
33958 AAAATTATGA
*
33968 AAAAGGGGGGCGGTATTTAGC
1 AAAAGGGGGGCGGTATATAGC
33989 AAAAGGGGGGCGGTGA-ATAGC
1 AAAAGGGGGGCGGT-ATATAGC
34010 AAA
1 AAA
34013 CCCCTTTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.36, C:0.09, G:0.42, T:0.13
Consensus pattern (21 bp):
AAAAGGGGGGCGGTATATAGC
Found at i:38179 original size:14 final size:15
Alignment explanation
Indices: 38150--38207 Score: 57
Period size: 14 Copynumber: 3.9 Consensus size: 15
38140 AGTAAGTAAT
*
38150 GGGTAACTTAATTCA
1 GGGTAACTTAAGTCA
38165 GGGTAA-TTAAGTCA
1 GGGTAACTTAAGTCA
* *
38179 GTAAGTAACTTAATTCA
1 G--GGTAACTTAAGTCA
38196 GGGTAA-TTAAGT
1 GGGTAACTTAAGT
38208 GAGTCAGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 13 0.37
15 10 0.29
16 4 0.11
17 8 0.23
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (15 bp):
GGGTAACTTAAGTCA
Found at i:38406 original size:174 final size:174
Alignment explanation
Indices: 38054--38835 Score: 1164
Period size: 174 Copynumber: 4.5 Consensus size: 174
38044 CAGTAATAAG
* * * *
38054 AACTTAATTCAGGGCAATTAAGTAAGTCAGTGAAT-AGCTTAATTCAGGGTAATTAAGTAAGTCA
1 AACTTAATTCAGGGTAATTAAGTAATTCAGT-AATCAACTTAATTCAGGGTAATTAAGTAATTCA
* * *
38118 G----CAACTTAATTCAGGGTAATTAAGTAAGTAATG-GGTAACTTAATTCAGGGTAATTAAG--
65 GTAATCAACTTAATTCAGGGTAATTAAGTGAGTCA-GCAGTAACTTAATTCAGGGTAATTAAGTA
38176 --TCAGTAAGT-AACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
129 ATTCAGTAA-TCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
38220 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
1 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
*
38285 TAATCAACTTAATTCATGGTAATTAAGTGAGTCAGCAGTAACTTAATTCAGGGTAATTAAGTAA-
66 TAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGTAACTTAATTCAGGGTAATTAAGTAAT
38349 TCTAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
131 TC-AGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
38394 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
1 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
38459 TAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGTAACTTAATTCAGGGTAATTAAGTAAT
66 TAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGTAACTTAATTCAGGGTAATTAAGTAAT
* *
38524 TCAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGT-
131 TCAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
38567 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
1 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
* * * * * *
38632 TAATCAACTTAATTCAAGGTAATTGAGTGAGTCAGTAATCAACCTAATTCAGGGCAATTAAGTAA
66 TAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGT-AACTTAATTCAGGGTAATTAAGTAA
38697 TTCAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
130 TTCAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
* * * * * *
38742 AACTTTAATTCGGGGTAATTAAGTGAGTT-AATGAGT-AACTTAATTCAAGGTAATTAAGTAGTT
1 AAC-TTAATTCAGGGTAATTAAGT-AATTCAGT-AATCAACTTAATTCAGGGTAATTAAGTAATT
*
38805 CAATAAGT-AACTTAATTCAGGGTAATTAAGT
63 CAGTAA-TCAACTTAATTCAGGGTAATTAAGT
38836 TTAGTAAGAA
Statistics
Matches: 570, Mismatches: 28, Indels: 26
0.91 0.04 0.04
Matches are distributed among these distances:
165 3 0.01
166 57 0.10
169 1 0.00
170 51 0.09
173 103 0.18
174 272 0.48
175 5 0.01
176 72 0.13
177 6 0.01
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.32
Consensus pattern (174 bp):
AACTTAATTCAGGGTAATTAAGTAATTCAGTAATCAACTTAATTCAGGGTAATTAAGTAATTCAG
TAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGCAGTAACTTAATTCAGGGTAATTAAGTAAT
TCAGTAATCAACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
Found at i:38848 original size:35 final size:35
Alignment explanation
Indices: 38054--38835 Score: 1017
Period size: 35 Copynumber: 22.7 Consensus size: 35
38044 CAGTAATAAG
*
38054 AACTTAATTCAGGGCAATTAAGTAAGTCAGTGAAT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGT-AATC
*
38089 AGCTTAATTCAGGGTAATTAAGTAAGTCAG----C
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* **
38120 AACTTAATTCAGGGTAATTAAGTAAGT-AATGGGT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGT-AATC
38154 AACTTAATTCAGGGTAA-T---TAAGTCAGTAAGT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAA-TC
*
38185 AACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38220 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38255 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * * *
38290 AACTTAATTCATGGTAATTAAGTGAGTCAGCAGT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
38324 AACTTAATTCAGGGTAATTAAGTAA-TCTAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTC-AGTAATC
*
38359 AACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38394 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38429 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * *
38464 AACTTAATTCAGGGTAATTAAGTGAGTCAGCAGT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38498 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * *
38533 AACTTAATTCAGGGTAATTAAGTGAGTCAGCAGT-
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38567 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38602 AACTTAATTCAGGGTAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * *
38637 AACTTAATTCAAGGTAATTGAGTGAGTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * *
38672 AACCTAATTCAGGGCAATTAAGTAATTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
*
38707 AACTTAATTCAGGGTAATTAAGTGAGTCAGTAATC
1 AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
* * * * *
38742 AACTTTAATTCGGGGTAATTAAGTGAGTTAATGAGT-
1 AAC-TTAATTCAGGGTAATTAAGTAAGTCAGT-AATC
* *
38778 AACTTAATTCAAGGTAATTAAGT-AGTTCAATAAGT-
1 AACTTAATTCAGGGTAATTAAGTAAG-TCAGTAA-TC
38813 AACTTAATTCAGGGTAATTAAGT
1 AACTTAATTCAGGGTAATTAAGT
38836 TTAGTAAGAA
Statistics
Matches: 664, Mismatches: 61, Indels: 44
0.86 0.08 0.06
Matches are distributed among these distances:
30 6 0.01
31 46 0.07
32 1 0.00
33 3 0.00
34 108 0.16
35 468 0.70
36 30 0.05
37 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.32
Consensus pattern (35 bp):
AACTTAATTCAGGGTAATTAAGTAAGTCAGTAATC
Found at i:43491 original size:24 final size:24
Alignment explanation
Indices: 43464--43533 Score: 122
Period size: 24 Copynumber: 2.9 Consensus size: 24
43454 TTCTTCTTTT
*
43464 CCTCTACCATCATCTTCTTAAAGG
1 CCTCTTCCATCATCTTCTTAAAGG
43488 CCTCTTCCATCATCTTCTTAAAGG
1 CCTCTTCCATCATCTTCTTAAAGG
*
43512 ACTCTTCCATCATCTTCTTAAA
1 CCTCTTCCATCATCTTCTTAAA
43534 CGCCAAGACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.37
Consensus pattern (24 bp):
CCTCTTCCATCATCTTCTTAAAGG
Found at i:44711 original size:42 final size:43
Alignment explanation
Indices: 44626--44712 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 43
44616 ATCATACCTT
*
44626 CTTATAATGATAAACCCAATAGGGGTTTTATTGACAAGTGTCC
1 CTTATAATGATAAACCCAATAGGGGATTTATTGACAAGTGTCC
* * *
44669 CTTATAATGATTAACCCCATA-GGGATTTATTGAGAAGTGTCC
1 CTTATAATGATAAACCCAATAGGGGATTTATTGACAAGTGTCC
44711 CT
1 CT
44713 CTTAGGTCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 21 0.52
43 19 0.47
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (43 bp):
CTTATAATGATAAACCCAATAGGGGATTTATTGACAAGTGTCC
Found at i:44852 original size:21 final size:21
Alignment explanation
Indices: 44828--44870 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
44818 ACAATTTAAT
*
44828 TCTTCACCATTATTTCTTTTA
1 TCTTCACCAATATTTCTTTTA
* * *
44849 TCTTTACTAATATTTTTTTTA
1 TCTTCACCAATATTTCTTTTA
44870 T
1 T
44871 TTTACTCATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (21 bp):
TCTTCACCAATATTTCTTTTA
Found at i:44874 original size:20 final size:21
Alignment explanation
Indices: 44838--44876 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
44828 TCTTCACCAT
44838 TATTTCTTTTATCTTTACTAA
1 TATTTCTTTTATCTTTACTAA
*
44859 TATTTTTTTTAT-TTTACT
1 TATTTCTTTTATCTTTACT
44877 CATTAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (21 bp):
TATTTCTTTTATCTTTACTAA
Found at i:50423 original size:17 final size:17
Alignment explanation
Indices: 50376--50426 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
50366 TTCATACCAC
50376 ATGACTAATAATGTTTT
1 ATGACTAATAATGTTTT
* * * *
50393 ATTACCATTCATGTTTT
1 ATGACTAATAATGTTTT
*
50410 ATGACTAGTAATGTTTT
1 ATGACTAATAATGTTTT
50427 CCTCTTCAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.49
Consensus pattern (17 bp):
ATGACTAATAATGTTTT
Found at i:53738 original size:2 final size:2
Alignment explanation
Indices: 53733--53777 Score: 74
Period size: 2 Copynumber: 22.5 Consensus size: 2
53723 AATAAGTGTG
53733 TA TA TA TA TA TA -A GTA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
53775 TA T
1 TA T
53778 GCTTCAATAC
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.95
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:53747 original size:18 final size:18
Alignment explanation
Indices: 53720--53777 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
53710 GTAGTACACT
* *
53720 TATA-ATAAGTGTGTATA
1 TATATATAAGTATATATA
53737 TATATATAAGTATATATA
1 TATATATAAGTATATATA
53755 TATATAT-A-TATATATA
1 TATATATAAGTATATATA
53771 TATATAT
1 TATATAT
53778 GCTTCAATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
16 15 0.39
17 5 0.13
18 18 0.47
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (18 bp):
TATATATAAGTATATATA
Found at i:55516 original size:21 final size:21
Alignment explanation
Indices: 55490--55565 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
55480 TAATCCTATG
55490 TTGGAGGTCTCTTATTTATAT
1 TTGGAGGTCTCTTATTTATAT
* *
55511 TTGGAGGTCTTTTATTTACAT
1 TTGGAGGTCTCTTATTTATAT
* *
55532 TTGGAGGTTTCTTATTTATAA
1 TTGGAGGTCTCTTATTTATAT
* *
55553 TTAGAGGTTTCTT
1 TTGGAGGTCTCTT
55566 TCATATATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.20, C:0.08, G:0.20, T:0.53
Consensus pattern (21 bp):
TTGGAGGTCTCTTATTTATAT
Found at i:55572 original size:21 final size:20
Alignment explanation
Indices: 55535--55593 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
55525 TTTACATTTG
*
55535 GAGGTTTCTTATTTATAATTA
1 GAGGTTTCTT-TATATAATTA
*
55556 GAGGTTTCTTTCATATATTTA
1 GAGGTTTCTTT-ATATAATTA
*
55577 G-GTTTTCTTTATA-AATT
1 GAGGTTTCTTTATATAATT
55594 GCTTTAGTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 9 0.27
21 18 0.55
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (20 bp):
GAGGTTTCTTTATATAATTA
Found at i:67102 original size:21 final size:21
Alignment explanation
Indices: 67076--67151 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
67066 TAATCCTATG
67076 TTGGAGGTCTCTTATTTATAT
1 TTGGAGGTCTCTTATTTATAT
* *
67097 TTGGAGGTCTTTTATTTACAT
1 TTGGAGGTCTCTTATTTATAT
* * *
67118 TTGAAGGTTTCTTATTTATAA
1 TTGGAGGTCTCTTATTTATAT
* *
67139 TTAGAGGTTTCTT
1 TTGGAGGTCTCTT
67152 TCATATATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.21, C:0.08, G:0.18, T:0.53
Consensus pattern (21 bp):
TTGGAGGTCTCTTATTTATAT
Found at i:67158 original size:21 final size:19
Alignment explanation
Indices: 67123--67179 Score: 53
Period size: 21 Copynumber: 2.9 Consensus size: 19
67113 TACATTTGAA
*
67123 GGTTTCTTATTTATAATTAG
1 GGTTTCTT-TATATAATTAG
*
67143 AGGTTTCTTTCATATATTTAG
1 -GGTTTCTTT-ATATAATTAG
*
67164 GTTTTCTTTATA-AATT
1 GGTTTCTTTATATAATT
67180 GCTTTAGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 3 0.10
19 3 0.10
20 9 0.29
21 16 0.52
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.56
Consensus pattern (19 bp):
GGTTTCTTTATATAATTAG
Found at i:67559 original size:2 final size:2
Alignment explanation
Indices: 67552--67614 Score: 50
Period size: 2 Copynumber: 35.0 Consensus size: 2
67542 TCGAATATTA
* * *
67552 AT AT AT AT AT A- AT -T AA AT AT AT AT A- AC A- AT AT -T AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67589 AT AT AT A- AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67615 TATTTATAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
1 7 0.14
2 43 0.86
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:67593 original size:33 final size:34
Alignment explanation
Indices: 67545--67609 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
67535 GAACTGATCG
*
67545 AATATTAATATATATATAATTAAATATATATAAC
1 AATATTAAGATATATATAATTAAATATATATAAC
*
67579 AATATT-AGATATATATAATTATATATATATA
1 AATATTAAGATATATATAATTAAATATATATA
67610 TATATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (34 bp):
AATATTAAGATATATATAATTAAATATATATAAC
Found at i:69023 original size:2 final size:2
Alignment explanation
Indices: 69018--69046 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69008 TCCGTCCCAT
69018 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69047 GTCTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69208 original size:82 final size:81
Alignment explanation
Indices: 69110--69269 Score: 293
Period size: 82 Copynumber: 2.0 Consensus size: 81
69100 TAATGACAAC
* *
69110 CTTTTTTTTTTTGGTAGAATTTAAAGACAACTTTTACTACTTTACAAGTGTTATAATAAAGTCCG
1 CTTTTTTTTTTTGGTAGAATTTAAAGACAACTTTTACTACTTTACAAGTGTCATAATAAAGTCCA
69175 CGATAATCTTGAATTT
66 CGATAATCTTGAATTT
69191 CTTTTTTTTTTTGGGTAGAATTTAAAGACAACTTTTACTACTTTACAAGTGTCATAATAAAGTCC
1 CTTTTTTTTTTT-GGTAGAATTTAAAGACAACTTTTACTACTTTACAAGTGTCATAATAAAGTCC
69256 ACGATAATCTTGAA
65 ACGATAATCTTGAA
69270 AAGTTTGGTA
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
81 12 0.16
82 64 0.84
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (81 bp):
CTTTTTTTTTTTGGTAGAATTTAAAGACAACTTTTACTACTTTACAAGTGTCATAATAAAGTCCA
CGATAATCTTGAATTT
Done.