Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009340.1 Corchorus capsularis cultivar CVL-1 contig09361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35141

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1817--1991
87
2.0
87
97
0
332
36
14
29
20
1.92
3043--3148
41
2.6
40
85
2
149
54
15
14
16
1.71
10989--11027
15
2.5
16
95
4
71
7
12
38
41
1.72
11805--11836
16
2.0
16
93
0
55
3
18
53
25
1.59
11790--11853
22
2.9
23
86
6
87
1
17
50
31
1.55
11825--11886
16
3.9
16
87
4
90
6
14
38
40
1.72
11787--11838
6
9.2
6
83
12
74
1
17
50
30
1.57
13990--14019
11
2.7
11
89
0
51
60
0
3
36
1.14
14455--14496
2
21.5
2
87
4
59
45
2
0
52
1.13
17016--17049
2
17.0
2
100
0
68
50
0
0
50
1.00
20802--20839
15
2.5
15
87
8
51
52
39
0
7
1.31
24050--24085
17
2.0
19
89
10
58
61
22
5
11
1.50
24219--24253
14
2.5
14
85
0
52
40
0
60
0
0.97
25050--25079
7
4.4
7
91
8
53
83
0
16
0
0.65
25052--25079
13
2.2
13
100
0
56
85
0
14
0
0.59
26299--26327
15
1.9
15
100
0
58
17
27
6
48
1.72
30089--30140
2
26.0
2
100
0
104
50
0
50
0
1.00

Tables:   1

The End!