Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009342.1 Corchorus capsularis cultivar CVL-1 contig09363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13494
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:13278 original size:20 final size:23

Alignment explanation


    Indices: 13233--13283  Score: 81
    Period size: 23  Copynumber: 2.3  Consensus size: 23

      13223 TCATATTCTG

                                   
      13233 GATTTTGTACCATAGCAGTGTAT
          1 GATTTTGTACCATAGCAGTGTAT

                                   
      13256 GATTTTGTACCATAG-A-T-TAT
          1 GATTTTGTACCATAGCAGTGTAT

                    
      13276 GATTTTGT
          1 GATTTTGT

      13284 GCTTTCCTTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  20   11  0.39
  21    1  0.04
  22    1  0.04
  23   15  0.54

ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45


Consensus pattern (23 bp):   
GATTTTGTACCATAGCAGTGTAT
Done.