Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009343.1 Corchorus capsularis cultivar CVL-1 contig09364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38463

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3438--3479
5
8.4
5
94
0
75
45
0
0
54
0.99
4274--4314
12
3.2
12
80
12
55
34
0
24
41
1.55
5055--5080
2
13.0
2
100
0
52
50
0
0
50
1.00
11866--11900
18
1.9
18
88
0
52
25
11
37
25
1.90
12055--12116
25
2.5
25
94
0
115
32
19
19
29
1.96
14982--15018
18
2.1
18
100
0
74
35
10
37
16
1.83
15824--15870
23
2.0
23
91
0
76
46
21
12
19
1.82
16651--16684
11
3.2
10
84
15
50
29
2
17
50
1.61
18097--18156
31
1.9
32
86
3
86
50
11
8
30
1.68
20510--20534
3
8.3
3
100
0
50
32
32
0
36
1.58
20749--20795
22
2.1
22
88
0
67
34
12
10
42
1.78
28595--28816
72
3.1
72
96
0
408
27
19
15
38
1.91
30502--30641
72
1.9
72
88
0
208
25
18
13
42
1.87
32427--32584
79
2.0
79
98
0
307
37
10
24
27
1.88
34476--34500
6
4.2
6
100
0
50
32
52
16
0
1.44
37523--37548
3
8.7
3
100
0
52
0
69
30
0
0.89
38094--38128
9
3.9
9
92
7
54
0
5
2
91
0.50

Tables:   1

The End!