Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009346.1 Corchorus capsularis cultivar CVL-1 contig09367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24026
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Found at i:97 original size:21 final size:22
Alignment explanation
Indices: 73--376 Score: 112
Period size: 22 Copynumber: 13.9 Consensus size: 22
63 ATCACTATTT
73 TACTGATTA-TTCTTTACTTTG
1 TACTGATTACTTCTTTACTTTG
94 TACTGATTACTAT-TTTACTCTTG
1 TACTGATTACT-TCTTTACT-TTG
*
117 T--TGATTACCTTC-TTACTTTT
1 TACTGATTA-CTTCTTTACTTTG
*
137 TACTGATTAC-CCTTTTACTCTT-
1 TACTGATTACTTC-TTTACT-TTG
* * * *
159 TAATGATTACTATTTTCTGCTCCTTTTT
1 TACTGATTAC----TTCT-TTAC-TTTG
187 TACTGATTACTGT-TTTACCTTT-
1 TACTGATTACT-TCTTTA-CTTTG
* * * *
209 TACTGATTGCCT-TTTGCTTTT
1 TACTGATTACTTCTTTACTTTG
*
230 TACTGATTACCT-TTTACTTCT-
1 TACTGATTACTTCTTTACTT-TG
*
251 TACTGATTAGCCT-TTTACTTCT-
1 TACTGATTA-CTTCTTTACTT-TG
*
273 TACTGATTACTGT-TTTACTCT-
1 TACTGATTACT-TCTTTACTTTG
* *
294 TACTGATTAC-TATTTACTTTC
1 TACTGATTACTTCTTTACTTTG
*
315 TACTGACTACTAT-TTTACTCTTG
1 TACTGATTACT-TCTTTACT-TTG
*
338 T--TGATTACCTTC-TTACTTTT
1 TACTGATTA-CTTCTTTACTTTG
358 TACTGATTACTAT-TTTACT
1 TACTGATTACT-TCTTTACT
377 ATTACTAATT
Statistics
Matches: 227, Mismatches: 21, Indels: 69
0.72 0.07 0.22
Matches are distributed among these distances:
19 1 0.00
20 18 0.08
21 86 0.38
22 87 0.38
23 15 0.07
24 3 0.01
25 1 0.00
26 1 0.00
27 5 0.02
28 10 0.04
ACGTcount: A:0.19, C:0.20, G:0.08, T:0.54
Consensus pattern (22 bp):
TACTGATTACTTCTTTACTTTG
Found at i:145 original size:43 final size:42
Alignment explanation
Indices: 85--396 Score: 268
Period size: 43 Copynumber: 7.1 Consensus size: 42
75 CTGATTATTC
* *
85 TTTACTTTGTACTGATTACTATTTTACTCTTGTTGATTACCT
1 TTTACTTTTTACTGATTACTATTTTACTCTTATTGATTACCT
** * *
127 TCTTACTTTTTACTGATTACCCTTTTACTCTTTAATGATTACTATTT
1 T-TTACTTTTTACTGATTACTATTTTACTC-TTATTGATTAC---CT
* * * * *
174 TCTGCTCCTTTTTTACTGATTACTGTTTTACCTTTTACTGATTGCCT
1 T-T--TAC-TTTTTACTGATTACTATTTTA-CTCTTATTGATTACCT
* * *
221 TTTGCTTTTTACTGATTAC-CTTTTACTTCTTACTGATTAGCCT
1 TTTACTTTTTACTGATTACTATTTTAC-TCTTATTGATTA-CCT
* * *
264 TTTACTTCTTACTGATTACTGTTTTACTCTTACTGATTA-CT
1 TTTACTTTTTACTGATTACTATTTTACTCTTATTGATTACCT
* * *
305 ATTTACTTTCTACTGACTACTATTTTACTCTTGTTGATTACCT
1 -TTTACTTTTTACTGATTACTATTTTACTCTTATTGATTACCT
* * *
348 TCTTACTTTTTACTGATTACTATTTTACTATTACTAATTACCAT
1 T-TTACTTTTTACTGATTACTATTTTACTCTTATTGATTACC-T
392 TTTAC
1 TTTAC
397 CCTTTCAGAT
Statistics
Matches: 222, Mismatches: 32, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.01
42 50 0.23
43 111 0.50
44 19 0.09
46 1 0.00
47 6 0.03
49 2 0.01
50 28 0.13
51 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.54
Consensus pattern (42 bp):
TTTACTTTTTACTGATTACTATTTTACTCTTATTGATTACCT
Found at i:254 original size:64 final size:62
Alignment explanation
Indices: 184--428 Score: 214
Period size: 64 Copynumber: 3.9 Consensus size: 62
174 TCTGCTCCTT
* * *
184 TTTTACTGATTACTGTTTTACCTTTTACTGATTGCCTTTTGCTTTTTACTGATTACCTTTTAC
1 TTTTACTGATTACTATTTTACCTTTT-CTGATTACCTTTTACTTTTTACTGATTACCTTTTAC
* * *
247 TTCTTACTGATTAGC-CTTTTA-CTTCTTACTGATTACTGTTTTAC-TCTTACTGATTA-CTATT
1 TT-TTACTGATTA-CTATTTTACCTT-TT-CTGATTAC-CTTTTACTTTTTACTGATTACCT-TT
308 TAC
60 TAC
* * *
311 TTTCTACTGACTACTATTTTACTCTTGT-TGATTACCTTCTTACTTTTTACTGATTACTATTTTA
1 TTT-TACTGATTACTATTTTAC-CTTTTCTGATTACCTT-TTACTTTTTACTGATTAC-CTTTTA
375 C
62 C
* * * * *
376 TATTACTAATTACCATTTTACCCTTTCAGA-TACCTTTTTACTTTTTACTGATT
1 TTTTACTGATTACTATTTTACCTTTTCTGATTACC-TTTTACTTTTTACTGATT
429 GCATGCTATT
Statistics
Matches: 149, Mismatches: 18, Indels: 30
0.76 0.09 0.15
Matches are distributed among these distances:
62 2 0.01
63 43 0.29
64 86 0.58
65 14 0.09
66 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (62 bp):
TTTTACTGATTACTATTTTACCTTTTCTGATTACCTTTTACTTTTTACTGATTACCTTTTAC
Found at i:380 original size:14 final size:15
Alignment explanation
Indices: 350--383 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
340 GATTACCTTC
350 TTACT-TTTTACTGA
1 TTACTATTTTACTGA
364 TTACTATTTTACT-A
1 TTACTATTTTACTGA
378 TTACTA
1 TTACTA
384 ATTACCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.15, G:0.03, T:0.56
Consensus pattern (15 bp):
TTACTATTTTACTGA
Found at i:387 original size:21 final size:21
Alignment explanation
Indices: 186--396 Score: 153
Period size: 21 Copynumber: 9.9 Consensus size: 21
176 TGCTCCTTTT
* *
186 TTACTGATTACTGTTTTACCTT
1 TTACTGATTACTATTTTA-CTC
* * * *
208 TTACTGATTGC-CTTTTGCTTT
1 TTACTGATTACTATTTTAC-TC
*
229 TTACTGATTAC-CTTTTACTTC
1 TTACTGATTACTATTTTAC-TC
*
250 TTACTGATTAGC-CTTTTACTTC
1 TTACTGATTA-CTATTTTAC-TC
*
272 TTACTGATTACTGTTTTACTC
1 TTACTGATTACTATTTTACTC
*
293 TTACTGATTACTA-TTTACTT
1 TTACTGATTACTATTTTACTC
*
313 TCTACTGACTACTATTTTACTC
1 T-TACTGATTACTATTTTACTC
** * *
335 TTGTTGATTACCT-TCTTACTTT
1 TTACTGATTA-CTATTTTAC-TC
*
357 TTACTGATTACTATTTTACTA
1 TTACTGATTACTATTTTACTC
* *
378 TTACTAATTACCATTTTAC
1 TTACTGATTACTATTTTAC
397 CCTTTCAGAT
Statistics
Matches: 159, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
20 8 0.05
21 91 0.57
22 60 0.38
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (21 bp):
TTACTGATTACTATTTTACTC
Found at i:747 original size:55 final size:55
Alignment explanation
Indices: 678--819 Score: 221
Period size: 55 Copynumber: 2.6 Consensus size: 55
668 AATCAATTTA
* * * * *
678 CTGATTACTATCTTTTTACCTGATTACTGATTTACTGATTACTATTACCTTGACT
1 CTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTATTACCTTAACT
733 CTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTATTACCTTAACT
1 CTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTATTACCTTAACT
* *
788 CTAATTAATCCCTTTTTACTTAATTACTGATT
1 CTGATTAATCTCTTTTTACTTAATTACTGATT
820 GCCCCCTTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 80 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (55 bp):
CTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTATTACCTTAACT
Found at i:1557 original size:51 final size:50
Alignment explanation
Indices: 1501--1838 Score: 365
Period size: 51 Copynumber: 6.7 Consensus size: 50
1491 TATTTTTTAA
* * * *
1501 AAAAATTCAATCTTTTACTCAAAGGTTAAACCTTTATTCACTAATTATTCT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTACT-T
* * * * *
1552 AAAAATTCAATCTTTTACTCAAAGATGACATTTTTCTTTACCAATTACTT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTACTT
* * * * * *
1602 AAAAA-ACAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCTA
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTA--CTT
* * * * *
1653 AAAAATTCAATCTTTTACTCAAAGATGACATTTTTCTTTACCAATTACTT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTACTT
* *
1703 AAAAATTCAATCTTTTATTCAAAGGTTAAATCTTTATTTACTAATTACTCT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTACT-T
* * * * *
1754 AAAAATTCAATCTTTTACTCAAAGATGACAT-TATTCTTTACCAATCACTT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCT-TTATTTACCAATTACTT
*
1804 AAAAATTCAATCTTTTATTCAAAGGTTAAATCTTT
1 AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTT
1839 TAACCAAAGG
Statistics
Matches: 232, Mismatches: 49, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
49 31 0.13
50 81 0.35
51 89 0.38
52 31 0.13
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.41
Consensus pattern (50 bp):
AAAAATTCAATCTTTTACTCAAAGGTTAAATCTTTATTTACCAATTACTT
Found at i:1686 original size:101 final size:101
Alignment explanation
Indices: 1501--1838 Score: 588
Period size: 101 Copynumber: 3.3 Consensus size: 101
1491 TATTTTTTAA
*
1501 AAAAATTCAATCTTTTACTCAAAGGTTAAACCTTTATTCACTAATTATTCTAAAAATTCAATCTT
1 AAAAATTCAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCTAAAAATTCAATCTT
1566 TTACTCAAAGATGACATTTTTCTTTACCAATTACTT
66 TTACTCAAAGATGACATTTTTCTTTACCAATTACTT
*
1602 AAAAA-ACAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCTAAAAAATTCAATCT
1 AAAAATTCAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCT-AAAAATTCAATCT
1666 TTTACTCAAAGATGACATTTTTCTTTACCAATTACTT
65 TTTACTCAAAGATGACATTTTTCTTTACCAATTACTT
* * *
1703 AAAAATTCAATCTTTTATTCAAAGGTTAAATCTTTATTTACTAATTACTCTAAAAATTCAATCTT
1 AAAAATTCAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCTAAAAATTCAATCTT
* *
1768 TTACTCAAAGATGACATTATTCTTTACCAATCACTT
66 TTACTCAAAGATGACATTTTTCTTTACCAATTACTT
*
1804 AAAAATTCAATCTTTTATTCAAAGGTTAAATCTTT
1 AAAAATTCAATCTTTTATTCAAAGGTTAAACCTTT
1839 TAACCAAAGG
Statistics
Matches: 227, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
100 43 0.19
101 143 0.63
102 41 0.18
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.41
Consensus pattern (101 bp):
AAAAATTCAATCTTTTATTCAAAGGTTAAACCTTTATTCACTAATTATTCTAAAAATTCAATCTT
TTACTCAAAGATGACATTTTTCTTTACCAATTACTT
Found at i:1837 original size:20 final size:20
Alignment explanation
Indices: 1812--1866 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1802 TTAAAAATTC
**
1812 AATCTTTTATTCAAAGGTTA
1 AATCTTTTAACCAAAGGTTA
1832 AATCTTTTAACCAAAGGTTA
1 AATCTTTTAACCAAAGGTTA
* *
1852 CATCTTTTAGCCAAA
1 AATCTTTTAACCAAA
1867 TATCCCATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (20 bp):
AATCTTTTAACCAAAGGTTA
Found at i:4400 original size:28 final size:25
Alignment explanation
Indices: 4347--4415 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
4337 AAATTGAAGG
*
4347 TGACTAAAATGCCCCTAAGTGCAAAAAA
1 TGACCAAAATG-CCCTAAGTGC--AAAA
**
4375 TGACCAAAATGCCCTGGGTGCGAAAA
1 TGACCAAAATGCCCTAAGTGC-AAAA
*
4401 TGACCAAAATACCCT
1 TGACCAAAATGCCCT
4416 TGGGCGACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 18 0.50
27 8 0.22
28 10 0.28
ACGTcount: A:0.41, C:0.25, G:0.17, T:0.17
Consensus pattern (25 bp):
TGACCAAAATGCCCTAAGTGCAAAA
Found at i:12470 original size:25 final size:25
Alignment explanation
Indices: 12433--12485 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
12423 TTATGTGGCC
* *
12433 TTTTATTTGACTTTTAGTCTTTTGG
1 TTTTATTTCACTTTTAGTCTTTGGG
*
12458 TTTTCTTTCACTTTTAGTCTTTGGG
1 TTTTATTTCACTTTTAGTCTTTGGG
12483 TTT
1 TTT
12486 CTTGATTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.09, C:0.11, G:0.15, T:0.64
Consensus pattern (25 bp):
TTTTATTTCACTTTTAGTCTTTGGG
Found at i:12486 original size:24 final size:25
Alignment explanation
Indices: 12442--12488 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
12432 CTTTTATTTG
*
12442 ACTTTTAGTCTTTTGGTTTTCTTTC
1 ACTTTTAGTCTTTTGGGTTTCTTTC
12467 ACTTTTAGTC-TTTGGGTTTCTT
1 ACTTTTAGTCTTTTGGGTTTCTT
12489 GATTGATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.09, C:0.15, G:0.15, T:0.62
Consensus pattern (25 bp):
ACTTTTAGTCTTTTGGGTTTCTTTC
Found at i:17592 original size:60 final size:63
Alignment explanation
Indices: 17516--17635 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 63
17506 AGAGAGGAAG
* * * *
17516 TAAAAAGATTAATTAGTAGATTGATAA-T-TA-AGGAAGTAAAAGTAGTAATCAGTAATCAAA
1 TAAAAAGATTAATTAGTAAACTGATAACTAGAGAGGAAGTAAAAGTAGCAATCAGTAATCAAA
*
17576 TAAAAGGATTAATTAGTAAACTGATAACTAAGAGAGGAAGTAAAAGTAGCAATCAGTAAT
1 TAAAAAGATTAATTAGTAAACTGATAACT-AGAGAGGAAGTAAAAGTAGCAATCAGTAAT
17636 TAAGGGTCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
60 24 0.47
61 1 0.02
63 1 0.02
64 25 0.49
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (63 bp):
TAAAAAGATTAATTAGTAAACTGATAACTAGAGAGGAAGTAAAAGTAGCAATCAGTAATCAAA
Found at i:17664 original size:32 final size:31
Alignment explanation
Indices: 17613--17698 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 31
17603 CTAAGAGAGG
* *
17613 AAGTAAAAGTAGCAATCAGTAATTAAGGGTCA
1 AAGTAAAAG-AGTAATCAGTAATTAAGAGTCA
17645 AAGTAAAAGAGTAAGTCAGTAATTAAGAGTCA
1 AAGTAAAAGAGTAA-TCAGTAATTAAGAGTCA
* *
17677 AGGTAAAAGGATTAATCAGTAA
1 AAGTAAAA-GAGTAATCAGTAA
17699 ATTGATAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
31 4 0.08
32 39 0.81
33 5 0.10
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (31 bp):
AAGTAAAAGAGTAATCAGTAATTAAGAGTCA
Found at i:17785 original size:32 final size:31
Alignment explanation
Indices: 17767--17877 Score: 111
Period size: 32 Copynumber: 3.6 Consensus size: 31
17757 ATAAAGTAAA
*
17767 AAAAGAAGTAATCAGTAAAAAGAAAT-AAA--
1 AAAAGAAGTAATCAGTAAAAAG-AGTGAAAGT
* * * **
17796 AGAGGAAGTGATCAGTAGAATGGAGTGAAAGT
1 AAAAGAAGTAATCAGTA-AAAAGAGTGAAAGT
*
17828 AAAAGAAGTAATCAGTAAAATGGAGTGAAAGT
1 AAAAGAAGTAATCAGTAAAA-AGAGTGAAAGT
17860 AAAAGAAGTAATCAGTAA
1 AAAAGAAGTAATCAGTAA
17878 GTTGGTAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 16 0.24
30 6 0.09
31 2 0.03
32 43 0.64
ACGTcount: A:0.55, C:0.04, G:0.24, T:0.17
Consensus pattern (31 bp):
AAAAGAAGTAATCAGTAAAAAGAGTGAAAGT
Found at i:17804 original size:29 final size:31
Alignment explanation
Indices: 17748--17877 Score: 83
Period size: 32 Copynumber: 4.2 Consensus size: 31
17738 AATCAGCAAA
17748 AGTAAAAAGATAAAGTAAAAAAAGAAGTAATC
1 AGTAAAAAGA-AAAGTAAAAAAAGAAGTAATC
* * *
17780 AGTAAAAAG-AAA-TAAAAGAGGAAGTGATC
1 AGTAAAAAGAAAAGTAAAAAAAGAAGTAATC
* * *
17809 AGTAGAATG--GAGTGAAAGTAAAAGAAGTAATC
1 AGTAAAAAGAAAAGT-AAA--AAAAGAAGTAATC
* *
17841 AGTAAAATG--GAGTGAAAGTAAAAGAAGTAATC
1 AGTAAAAAGAAAAGT-AAA--AAAAGAAGTAATC
17873 AGTAA
1 AGTAA
17878 GTTGGTAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.26
30 6 0.07
32 55 0.65
ACGTcount: A:0.57, C:0.03, G:0.23, T:0.17
Consensus pattern (31 bp):
AGTAAAAAGAAAAGTAAAAAAAGAAGTAATC
Found at i:17844 original size:16 final size:16
Alignment explanation
Indices: 17825--17877 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
17815 ATGGAGTGAA
17825 AGTAAAAGAAGTAATC
1 AGTAAAAGAAGTAATC
*
17841 AGTAAAATGGAGTGAA--
1 AGTAAAA-GAAGT-AATC
17857 AGTAAAAGAAGTAATC
1 AGTAAAAGAAGTAATC
17873 AGTAA
1 AGTAA
17878 GTTGGTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 2 0.06
15 4 0.13
16 19 0.61
17 4 0.13
18 2 0.06
ACGTcount: A:0.55, C:0.04, G:0.23, T:0.19
Consensus pattern (16 bp):
AGTAAAAGAAGTAATC
Found at i:17900 original size:40 final size:40
Alignment explanation
Indices: 17850--17958 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 40
17840 CAGTAAAATG
* **
17850 GAGTGAAAGTAAAAGAAGTAATCAGTAAGTTGGTAATTAA
1 GAGTAAAAGTAAAAGAAGTAATCAGTAAAATGGTAATTAA
17890 GAGTAAAAGTAAAAGAAGTAATCAGTAAAATGGTAATTAA
1 GAGTAAAAGTAAAAGAAGTAATCAGTAAAATGGTAATTAA
17930 GAGTAAAAGTAAAAGAAGTAATCAGTAAA
1 GAGTAAAAGTAAAAGAAGTAATCAGTAAA
17959 TCGGTAAAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.53, C:0.03, G:0.22, T:0.22
Consensus pattern (40 bp):
GAGTAAAAGTAAAAGAAGTAATCAGTAAAATGGTAATTAA
Found at i:17982 original size:16 final size:17
Alignment explanation
Indices: 17956--17989 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
17946 AGTAATCAGT
*
17956 AAATCGGTAAAGAGTAA
1 AAATCGGTAAAAAGTAA
17973 AAAT-GGTAAAAAGTAA
1 AAATCGGTAAAAAGTAA
17989 A
1 A
17990 GAGTAATCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.59, C:0.03, G:0.21, T:0.18
Consensus pattern (17 bp):
AAATCGGTAAAAAGTAA
Found at i:17983 original size:40 final size:39
Alignment explanation
Indices: 17850--17974 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 39
17840 CAGTAAAATG
* * *
17850 GAGTGAAAGTAAAAGAAGTAATCAGTAAGTTGGTAATTAA
1 GAGTAAAAGTAAAAGAAGTAATCAGTAAATCGGTAA-TAA
17890 GAGTAAAAGTAAAAGAAGTAATCAGTAAAAT-GGTAATTAA
1 GAGTAAAAGTAAAAGAAGTAATCAGT-AAATCGGTAA-TAA
17930 GAGTAAAAGTAAAAGAAGTAATCAGTAAATCGGT-A-AA
1 GAGTAAAAGTAAAAGAAGTAATCAGTAAATCGGTAATAA
17967 GAGTAAAA
1 GAGTAAAA
17975 ATGGTAAAAA
Statistics
Matches: 81, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
37 10 0.12
39 5 0.06
40 63 0.78
41 3 0.04
ACGTcount: A:0.53, C:0.03, G:0.22, T:0.22
Consensus pattern (39 bp):
GAGTAAAAGTAAAAGAAGTAATCAGTAAATCGGTAATAA
Found at i:18061 original size:32 final size:33
Alignment explanation
Indices: 18001--18076 Score: 111
Period size: 32 Copynumber: 2.3 Consensus size: 33
17991 AGTAATCAGT
18001 AAAGAGTAAAATGGTAAAATGGTAATTAAATTC
1 AAAGAGTAAAATGGTAAAATGGTAATTAAATTC
*
18034 AAAGAGTAAAAT-G-ACAATTGGTAATTAAATTC
1 AAAGAGTAAAATGGTA-AAATGGTAATTAAATTC
*
18066 GAAGAGTAAAA
1 AAAGAGTAAAA
18077 ATAGTAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
31 1 0.03
32 27 0.68
33 12 0.30
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.25
Consensus pattern (33 bp):
AAAGAGTAAAATGGTAAAATGGTAATTAAATTC
Found at i:18083 original size:26 final size:26
Alignment explanation
Indices: 18054--18110 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
18044 ATGACAATTG
*
18054 GTAATTAAATTCGA-AGAGTAAAAATA
1 GTAATTAAATTCAAGAGAGT-AAAATA
18080 GTAATTAAATTCAAGAGAGTAAAATA
1 GTAATTAAATTCAAGAGAGTAAAATA
18106 GTAAT
1 GTAAT
18111 CAGTAAGGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.28
Consensus pattern (26 bp):
GTAATTAAATTCAAGAGAGTAAAATA
Found at i:18132 original size:7 final size:7
Alignment explanation
Indices: 18112--18239 Score: 73
Period size: 7 Copynumber: 17.9 Consensus size: 7
18102 AATAGTAATC
*
18112 AGTAAGG
1 AGTAAAG
*
18119 AGAAAAG
1 AGTAAAG
18126 AGTAAAG
1 AGTAAAG
**
18133 AGTAATC
1 AGTAAAG
18140 AGTAAAG
1 AGTAAAG
18147 AGTAAA-
1 AGTAAAG
*
18153 ATGGTAAAA
1 A--GTAAAG
18162 AGTAAAG
1 AGTAAAG
**
18169 AGTAATC
1 AGTAAAG
18176 AGTAAAG
1 AGTAAAG
*
18183 AG-AAAA
1 AGTAAAG
18189 ATGGTAAA-
1 A--GTAAAG
18197 ATGTAAAG
1 A-GTAAAG
**
18205 AGTAATC
1 AGTAAAG
*
18212 AGTAAAA
1 AGTAAAG
18219 AGTAAAG
1 AGTAAAG
*
18226 TGGTAAAG
1 -AGTAAAG
18234 AGTAAA
1 AGTAAA
18240 TGGTAATTAG
Statistics
Matches: 92, Mismatches: 21, Indels: 16
0.71 0.16 0.12
Matches are distributed among these distances:
6 5 0.05
7 69 0.75
8 14 0.15
9 4 0.04
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.18
Consensus pattern (7 bp):
AGTAAAG
Found at i:18143 original size:14 final size:14
Alignment explanation
Indices: 18105--18151 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
18095 AGAGTAAAAT
*
18105 AGTAATCAGTAAGG
1 AGTAATCAGTAAAG
* **
18119 AGAAAAGAGTAAAG
1 AGTAATCAGTAAAG
18133 AGTAATCAGTAAAG
1 AGTAATCAGTAAAG
18147 AGTAA
1 AGTAA
18152 AATGGTAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.53, C:0.04, G:0.26, T:0.17
Consensus pattern (14 bp):
AGTAATCAGTAAAG
Found at i:18153 original size:29 final size:30
Alignment explanation
Indices: 18105--18238 Score: 94
Period size: 36 Copynumber: 4.2 Consensus size: 30
18095 AGAGTAAAAT
*
18105 AGTAATCAGTAAGGAG-AAAAG-AGTAAAG
1 AGTAATCAGTAAAGAGTAAAAGAAGTAAAG
18133 AGTAATCAGTAAAGAGTAAAATGGTAAAAAGTAAAG
1 AGTAATCAGTAAAGAGTAAAA--G----AAGTAAAG
*
18169 AGTAATCAGTAAAGAGAAAAATGGTAAAATGTAAAG
1 AGTAATCAGTAAAGAGTAAAA--G---AA-GTAAAG
* **
18205 AGTAATCAGTAAAAAGT-AAAGTGGTAAAG
1 AGTAATCAGTAAAGAGTAAAAGAAGTAAAG
18234 AGTAA
1 AGTAA
18239 ATGGTAATTA
Statistics
Matches: 90, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
28 15 0.17
29 15 0.17
31 1 0.01
33 1 0.01
35 7 0.08
36 51 0.57
ACGTcount: A:0.54, C:0.03, G:0.24, T:0.19
Consensus pattern (30 bp):
AGTAATCAGTAAAGAGTAAAAGAAGTAAAG
Found at i:18166 original size:36 final size:36
Alignment explanation
Indices: 18121--18239 Score: 184
Period size: 36 Copynumber: 3.3 Consensus size: 36
18111 CAGTAAGGAG
18121 AAAAGAGTAAAGAGTAATCAGTAAAGAGTAAAATGGT
1 AAAA-AGTAAAGAGTAATCAGTAAAGAGTAAAATGGT
*
18158 AAAAAGTAAAGAGTAATCAGTAAAGAGAAAAATGGT
1 AAAAAGTAAAGAGTAATCAGTAAAGAGTAAAATGGT
* * *
18194 AAAATGTAAAGAGTAATCAGTAAAAAGTAAAGTGGT
1 AAAAAGTAAAGAGTAATCAGTAAAGAGTAAAATGGT
*
18230 AAAGAGTAAA
1 AAAAAGTAAA
18240 TGGTAATTAG
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
36 71 0.95
37 4 0.05
ACGTcount: A:0.56, C:0.03, G:0.23, T:0.18
Consensus pattern (36 bp):
AAAAAGTAAAGAGTAATCAGTAAAGAGTAAAATGGT
Found at i:18245 original size:14 final size:14
Alignment explanation
Indices: 18195--18245 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
18185 AAAAATGGTA
18195 AAAT-GTAAAGAGT
1 AAATGGTAAAGAGT
* *
18208 -AATCAGTAAAAAGT
1 AAAT-GGTAAAGAGT
18222 AAAGTGGTAAAGAGT
1 AAA-TGGTAAAGAGT
18237 AAATGGTAA
1 AAATGGTAA
18246 TTAGAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 3 0.10
14 14 0.45
15 13 0.42
16 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.24, T:0.22
Consensus pattern (14 bp):
AAATGGTAAAGAGT
Found at i:18245 original size:29 final size:28
Alignment explanation
Indices: 18141--18245 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 28
18131 AGAGTAATCA
*
18141 GTAAAGAGTAAAATGGTAAAAAGTAAAGA
1 GTAAAGAGT-AAATGGTAAAAAGTAAAGT
** *
18170 GTAATCAGTAAA-GAG-AAAAATGGTAAAAT
1 GTAAAGAGTAAATG-GTAAAAA--GTAAAGT
*
18199 GTAAAGAGT-AATCAGTAAAAAGTAAAGT
1 GTAAAGAGTAAAT-GGTAAAAAGTAAAGT
18227 GGTAAAGAGTAAATGGTAA
1 -GTAAAGAGTAAATGGTAA
18246 TTAGAAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
27 6 0.10
28 12 0.20
29 33 0.56
30 8 0.14
ACGTcount: A:0.54, C:0.02, G:0.24, T:0.20
Consensus pattern (28 bp):
GTAAAGAGTAAATGGTAAAAAGTAAAGT
Found at i:18292 original size:54 final size:52
Alignment explanation
Indices: 18230--18360 Score: 133
Period size: 54 Copynumber: 2.5 Consensus size: 52
18220 GTAAAGTGGT
* *
18230 AAAGAGTAAATGGTAATTAGAAAAAAAAAGGTGAAAACTGGT-ATTCAATAGTAA
1 AAAGAGTAAATGGTAATTAGAAAAAAAAA-GT-AAAAATGGTAATTAAATAGT-A
* * *
18284 AAAGAGTAAAAATGGT-ATTCAGTAAAAAAGAGTAAAAATGGTAATTAAATGGTA
1 AAAGAGT--AAATGGTAATT-AGAAAAAAAAAGTAAAAATGGTAATTAAATAGTA
*
18338 AAAG-GTAAATAGTAATTAGAAAA
1 AAAGAGTAAATGGTAATTAGAAAA
18361 GAGTTAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
51 11 0.17
52 3 0.05
53 2 0.03
54 20 0.31
55 13 0.20
56 16 0.25
ACGTcount: A:0.55, C:0.02, G:0.20, T:0.23
Consensus pattern (52 bp):
AAAGAGTAAATGGTAATTAGAAAAAAAAAGTAAAAATGGTAATTAAATAGTA
Found at i:18318 original size:26 final size:26
Alignment explanation
Indices: 18253--18573 Score: 171
Period size: 26 Copynumber: 11.8 Consensus size: 26
18243 TAATTAGAAA
* *
18253 AAAAAAG-GTGAAAACTGGTATTCAAT
1 AAAAAAGAGT-AAAAATGGTATTCAGT
18279 AGTAAAAAGAGTAAAAATGGTATTCAGT
1 A--AAAAAGAGTAAAAATGGTATTCAGT
* *
18307 AAAAAAGAGTAAAAATGGTAATTAAAT
1 AAAAAAGAGTAAAAATGGT-ATTCAGT
** *
18334 GGTAAAAG-GT--AAATAGTAATT-AG-
1 -AAAAAAGAGTAAAAATGGT-ATTCAGT
18357 --AAAAGAGTTAAAAATGGTATTCAGT
1 AAAAAAGAG-TAAAAATGGTATTCAGT
*
18382 AAAAAAAATAGTAAAAATGGTATTCAGT
1 --AAAAAAGAGTAAAAATGGTATTCAGT
18410 AAAGGAAAAAAAGAGTAAAAAATGGTATTCAGT
1 ------AAAAAAGAGT-AAAAATGGTATTCAGT
* *
18443 -AAAAA-AGTAAGAAAATGATAATCAGT
1 AAAAAAGAGT-A-AAAATGGTATTCAGT
* *
18469 AAAAAAAAGAGTAAGAAAATGGTAATAAGT
1 --AAAAAAGAGT-A-AAAATGGTATTCAGT
* * *
18499 AAAAAAGAGTAAATATAGTAATCAGT
1 AAAAAAGAGTAAAAATGGTATTCAGT
*
18525 -AAAAAGAGTAAAAAAGGTAATT-AGT
1 AAAAAAGAGTAAAAATGGT-ATTCAGT
18550 AAAAGAAGAAGGTAGAAAATGGTA
1 AAAA-AAG-A-GTA-AAAATGGTA
18574 AAAAGGGAGT
Statistics
Matches: 240, Mismatches: 24, Indels: 59
0.74 0.07 0.18
Matches are distributed among these distances:
20 5 0.02
21 1 0.00
22 1 0.00
23 3 0.01
24 9 0.04
25 33 0.14
26 54 0.22
27 11 0.05
28 54 0.22
29 17 0.07
30 26 0.11
32 10 0.04
33 16 0.07
ACGTcount: A:0.56, C:0.02, G:0.20, T:0.21
Consensus pattern (26 bp):
AAAAAAGAGTAAAAATGGTATTCAGT
Found at i:18386 original size:16 final size:16
Alignment explanation
Indices: 18365--18412 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
18355 AGAAAAGAGT
18365 TAAAAATGGTATTCAG
1 TAAAAATGGTATTCAG
* *
18381 TAAAAA---AAAT-AG
1 TAAAAATGGTATTCAG
18393 TAAAAATGGTATTCAG
1 TAAAAATGGTATTCAG
18409 TAAA
1 TAAA
18413 GGAAAAAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
12 8 0.33
13 2 0.08
15 2 0.08
16 12 0.50
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27
Consensus pattern (16 bp):
TAAAAATGGTATTCAG
Found at i:18427 original size:75 final size:72
Alignment explanation
Indices: 18283--18427 Score: 170
Period size: 75 Copynumber: 1.9 Consensus size: 72
18273 TTCAATAGTA
* *
18283 AAAAGAGTAAAAATGGTATTCAGTAAAAAAGAGTAAAAATGGTAATTAAATGGTAAAAGGTAAAT
1 AAAAGAGTAAAAATGGTATTCAGTAAAAAAGAGTAAAAATGGTAATTAAAAGGTAAAA-G-AAAG
18348 AGTAATTAG
64 AGTAATTAG
*
18357 AAAAGAGTTAAAAATGGTATTCAGTAAAAAAAATAGTAAAAATGGT-ATTCAGTAAAGG-AAAA-
1 AAAAGAG-TAAAAATGGTATTCAGT--AAAAAAGAGTAAAAATGGTAATT-A--AAAGGTAAAAG
18419 AAAGAGTAA
60 AAAGAGTAA
18428 AAAATGGTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
74 7 0.11
75 25 0.40
76 3 0.05
77 19 0.31
78 4 0.06
79 4 0.06
ACGTcount: A:0.56, C:0.02, G:0.19, T:0.23
Consensus pattern (72 bp):
AAAAGAGTAAAAATGGTATTCAGTAAAAAAGAGTAAAAATGGTAATTAAAAGGTAAAAGAAAGAG
TAATTAG
Found at i:18431 original size:33 final size:30
Alignment explanation
Indices: 18357--18448 Score: 125
Period size: 33 Copynumber: 3.0 Consensus size: 30
18347 TAGTAATTAG
18357 AAAAGAGTTAAAAATGGTATTCAGT--AAAA
1 AAAAGAG-TAAAAATGGTATTCAGTAAAAAA
*
18386 AAAATAGTAAAAATGGTATTCAGTAAAGGAAA
1 AAAAGAGTAAAAATGGTATTCAGTAAA--AAA
18418 AAAAGAGTAAAAAATGGTATTCAGTAAAAAA
1 AAAAGAGT-AAAAATGGTATTCAGTAAAAAA
18449 GTAAGAAAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
28 17 0.30
29 6 0.11
30 1 0.02
31 3 0.05
32 10 0.18
33 19 0.34
ACGTcount: A:0.58, C:0.03, G:0.17, T:0.22
Consensus pattern (30 bp):
AAAAGAGTAAAAATGGTATTCAGTAAAAAA
Found at i:18436 original size:61 final size:56
Alignment explanation
Indices: 18357--18504 Score: 165
Period size: 61 Copynumber: 2.6 Consensus size: 56
18347 TAGTAATTAG
* * *
18357 AAAAGAGTTAAAAATGGTATTCAGTAAAAAAAAT-AGTAAAAATGGTATTCAGTAAAGGAAA
1 AAAAGAGTAAAAAATGGTATTCAGTAAAAAAAATAAG--AAAATGATAATCAGT--A--AAA
*
18418 AAAAGAGTAAAAAATGGTATTCAGT-AAAAAAGTAAGAAAATGATAATCAGTAAAA
1 AAAAGAGTAAAAAATGGTATTCAGTAAAAAAAATAAGAAAATGATAATCAGTAAAA
* *
18473 AAAAGAGTAAGAAAATGGTAATAAGTAAAAAA
1 AAAAGAGTAA-AAAATGGTATTCAGTAAAAAA
18505 GAGTAAATAT
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
55 13 0.17
56 13 0.17
57 6 0.08
59 13 0.17
60 7 0.09
61 26 0.33
ACGTcount: A:0.59, C:0.03, G:0.18, T:0.20
Consensus pattern (56 bp):
AAAAGAGTAAAAAATGGTATTCAGTAAAAAAAATAAGAAAATGATAATCAGTAAAA
Found at i:18501 original size:56 final size:54
Alignment explanation
Indices: 18415--18558 Score: 165
Period size: 56 Copynumber: 2.7 Consensus size: 54
18405 TCAGTAAAGG
* *
18415 AAAAAAAGAGTAAAAAATGGTATTCAGTAAAAAAGTAAG-AAA-AT-GATAATCAGT
1 AAAAAAAGAGTAAAAAATGGTAATAAGTAAAAAAG--AGTAAATATAG-TAATCAGT
18469 AAAAAAAAGAGTAAGAAAATGGTAATAAGTAAAAAAGAGTAAATATAGTAATCAGT
1 -AAAAAAAGAGTAA-AAAATGGTAATAAGTAAAAAAGAGTAAATATAGTAATCAGT
*
18525 --AAAAAGAGTAAAAAA-GGTAATTAGTAAAAGAAGA
1 AAAAAAAGAGTAAAAAATGGTAATAAGTAAAA-AAGA
18559 AGGTAGAAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
51 13 0.16
52 8 0.10
53 11 0.14
54 2 0.02
55 16 0.20
56 30 0.37
57 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.18, T:0.19
Consensus pattern (54 bp):
AAAAAAAGAGTAAAAAATGGTAATAAGTAAAAAAGAGTAAATATAGTAATCAGT
Found at i:18567 original size:81 final size:83
Alignment explanation
Indices: 18416--18574 Score: 211
Period size: 82 Copynumber: 1.9 Consensus size: 83
18406 CAGTAAAGGA
* *
18416 AAAAAAGAGTAAAAAATGGTATTCAGTAAAAAAGTAAGAAAATGATAATCAGTAAAAAAAAGAGT
1 AAAAAAGAGTAAAAAATAGTAATCAGTAAAAAAGTAAGAAAATGATAATCAGTAAAAAAAAGAGT
18481 AAGAAAATGGTAATAAGT
66 AAGAAAATGGTAATAAGT
* * *
18499 AAAAAAGAGT-AAATATAGTAATCAGTAAAAAGAGTAA-AAAA-GGTAATTAGTAAAAGAAGAAG
1 AAAAAAGAGTAAAAAATAGTAATCAGTAAAAA-AGTAAGAAAATGATAATCAGTAAAA-AA-AAG
18561 -GT-AGAAAATGGTAA
63 AGTAAGAAAATGGTAA
18575 AAAGGGAGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
81 24 0.35
82 26 0.38
83 18 0.26
ACGTcount: A:0.60, C:0.02, G:0.19, T:0.19
Consensus pattern (83 bp):
AAAAAAGAGTAAAAAATAGTAATCAGTAAAAAAGTAAGAAAATGATAATCAGTAAAAAAAAGAGT
AAGAAAATGGTAATAAGT
Found at i:20084 original size:18 final size:20
Alignment explanation
Indices: 20061--20109 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
20051 AATCTAACTA
*
20061 TTTCTTTTGTT-TTC-CTCC
1 TTTCTTTTCTTCTTCTCTCC
20079 TTTCTTTTCTTCTTCTCTCC
1 TTTCTTTTCTTCTTCTCTCC
20099 -TTCTTTCTCTT
1 TTTCTTT-TCTT
20110 TCCTTTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 10 0.37
19 9 0.33
20 8 0.30
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTCTTTTCTTCTTCTCTCC
Found at i:22053 original size:49 final size:49
Alignment explanation
Indices: 21990--22379 Score: 559
Period size: 49 Copynumber: 8.0 Consensus size: 49
21980 ATAAAAATTG
* * **
21990 GTGCCTTCTAGTCCGGGAACGGCATTTTGGGAAATAGCAGATAAAGGCAA
1 GTGCCTTC-CGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
* * *
22040 GTGCATTCCGTCCGGGAAGGGCATTTTGGGAAATAACAGATAAAAATAA
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
* *
22089 GTGCCTTCCGTCCGGGAAGGGCGATTTTAGGAAATAGC--ATAAAAATAA
1 GTGCCTTCCGTCCGGGAAGGGC-ATTTTGGGAAATAGCAGATAAAAACAA
* * *
22137 GTGTCTTCCGTCCGGGCAGGGCGTTTTGGGAAATAGCAGATAAAAACAA
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
* *
22186 GTGCCTCCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAATAA
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
* **
22235 GTGCCTTCCGTCCGGGAAGGGTATTTTGGGCGATAGCAGATAAAAACAA
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
**
22284 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGCGATAGCAGATAAAAACAA
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
* *
22333 GTGCCTCCCGTCCGGGAAGGGTATTTTGGGAAATAGCAGATAAAAAC
1 GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAAC
22380 CGAAAATAGA
Statistics
Matches: 307, Mismatches: 30, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
47 13 0.04
48 30 0.10
49 244 0.79
50 20 0.07
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (49 bp):
GTGCCTTCCGTCCGGGAAGGGCATTTTGGGAAATAGCAGATAAAAACAA
Done.