Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009348.1 Corchorus capsularis cultivar CVL-1 contig09369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2315
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.46


Found at i:1255 original size:24 final size:23

Alignment explanation


    Indices: 1228--1284  Score: 60
    Period size: 24  Copynumber: 2.3  Consensus size: 23

       1218 GAGGGATATT

                       *            
       1228 ATTTCATTTAGTAATAATTTGATA
          1 ATTT-ATTTAGAAATAATTTGATA

                *    *              
       1252 ATTTTTTGTTGAAATAATTTGATA
          1 ATTTATT-TAGAAATAATTTGATA

                     
       1276 ATTTTATTT
          1 A-TTTATTT

       1285 CATAATCTTT


Statistics
Matches: 27,  Mismatches: 4, Indels: 4
        0.77            0.11        0.11

Matches are distributed among these distances:
  23    2  0.07
  24   20  0.74
  25    5  0.19

ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56


Consensus pattern (23 bp):   
ATTTATTTAGAAATAATTTGATA
Done.