genome.fa.s9351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009351.1 Corchorus capsularis cultivar CVL-1 contig09372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125485

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119--1149	2	15.5	2	100	0	62	51	0	0	48	1.00
15685--15729	15	3.0	15	96	0	81	26	24	33	15	1.95
17402--17692	144	2.0	144	97	0	546	28	20	21	29	1.98
24416--24448	2	17.5	2	87	12	52	51	0	0	48	1.00
25903--25978	38	2.0	38	94	0	134	34	14	17	34	1.90
26507--26542	17	2.1	17	89	0	54	66	2	0	30	1.06
28109--28182	39	1.9	38	94	2	130	44	9	16	29	1.79
28187--28250	29	2.1	29	85	5	83	26	20	4	48	1.69
28200--28257	29	1.9	30	86	6	82	31	15	3	50	1.61
28360--28498	22	6.2	22	82	6	136	31	10	19	38	1.86
28336--28491	22	7.0	23	80	10	94	32	10	18	38	1.86
28552--28924	22	16.8	22	67	19	109	40	9	14	35	1.79
28779--28924	44	3.3	44	79	5	161	41	10	13	35	1.78
28739--28924	66	2.8	66	76	8	162	43	9	11	35	1.73
28783--28949	88	1.9	88	83	4	221	42	10	12	34	1.78
29032--29099	19	3.5	20	87	4	77	44	11	19	25	1.84
29041--29096	19	2.9	19	91	0	85	44	10	23	21	1.83
29087--29646	22	25.7	22	67	13	142	40	9	13	36	1.78
29087--29561	44	10.9	43	68	15	158	39	9	14	36	1.78
29256--29340	23	3.8	22	76	7	73	42	7	11	38	1.69
29431--29516	45	1.9	45	81	9	104	34	11	15	38	1.83
41082--41129	3	16.0	3	100	0	96	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54487--54545	29	2.0	29	100	0	118	32	23	10	33	1.88
63055--63098	21	2.1	21	86	0	61	20	40	6	31	1.79
63211--63278	26	2.6	26	86	4	93	55	8	2	32	1.45
63211--63254	15	3.2	15	72	24	51	54	9	0	36	1.32
63910--64078	85	2.0	85	98	0	329	26	12	24	36	1.91
66645--66884	129	1.9	129	97	0	453	30	14	13	42	1.83
77638--77690	10	5.0	10	73	13	52	5	20	45	28	1.74
78472--78622	50	3.0	51	83	5	184	24	25	15	35	1.94
90111--90143	16	2.1	15	94	5	57	27	54	18	0	1.44
90179--90278	32	3.1	31	84	2	119	34	37	21	8	1.82
90187--90278	16	5.8	16	76	10	80	34	36	19	8	1.83
90818--90912	42	2.3	42	87	3	129	42	18	4	34	1.70
91112--91208	16	6.1	16	79	7	90	31	39	18	10	1.84
97122--97193	36	2.0	36	97	0	135	31	27	9	30	1.89
98732--98773	19	2.2	20	82	4	50	73	0	23	2	0.94
100570--100600	16	1.9	16	100	0	62	9	6	32	51	1.60
101301--101344	21	2.1	21	87	8	63	29	2	4	63	1.26
102521--102555	16	2.2	16	94	0	61	60	31	2	5	1.35
102508--102599	48	1.9	48	86	4	132	54	27	8	9	1.62
102765--102844	15	5.1	15	79	8	79	41	35	6	17	1.75
102758--102863	32	3.3	32	84	2	133	42	36	5	15	1.70
103778--103831	26	2.1	26	100	0	108	33	3	22	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125186--125270	41	2.1	41	84	8	111	54	18	11	15	1.71

Tables:   1

The End!