Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009360.1 Corchorus capsularis cultivar CVL-1 contig09381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40989

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7146--7173
6
4.7
6
100
0
56
85
14
0
0
0.59
13796--13837
2
21.0
2
95
0
75
0
0
47
52
1.00
17209--17269
18
3.3
18
70
20
63
55
14
0
29
1.40
17198--17272
37
2.0
37
100
0
150
53
17
0
29
1.44
17198--17253
18
3.0
19
68
21
55
53
16
0
30
1.43
17254--17306
23
2.3
23
93
3
88
52
16
0
30
1.44
17262--17307
23
2.0
23
100
0
92
47
17
0
34
1.48
17656--17985
166
2.0
166
83
3
414
40
15
13
30
1.86
18603--18629
2
13.5
2
100
0
54
51
0
0
48
1.00
18688--18816
46
2.6
50
87
10
212
10
14
10
65
1.48
20271--20316
19
2.4
19
88
3
65
58
2
4
34
1.30
29116--29325
108
1.9
108
97
0
393
46
2
15
35
1.61
30832--30893
27
2.3
27
88
0
88
30
59
9
0
1.29
30836--30882
12
3.9
12
82
0
58
29
61
8
0
1.25
30854--30893
12
2.9
15
78
21
59
32
60
7
0
1.25
32543--32593
16
3.2
16
97
0
93
45
19
25
9
1.81
32859--32942
45
1.9
44
80
4
98
40
23
13
22
1.89
34843--34994
71
2.2
68
86
3
205
52
13
19
15
1.74
37651--39703
199
10.3
198
85
4
2553
34
17
13
33
1.90
37646--39703
798
2.6
789
85
6
2738
34
17
13
33
1.90

Tables:   1

The End!