Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009365.1 Corchorus capsularis cultivar CVL-1 contig09386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57192

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1307--1424
60
2.0
59
86
1
164
36
12
22
27
1.91
1330--1447
60
2.0
60
83
6
150
38
12
22
27
1.90
4523--4557
16
2.2
16
89
0
52
28
40
11
20
1.87
9997--10071
31
2.4
31
79
0
78
29
17
17
36
1.93
10089--10180
31
3.0
31
83
0
112
36
10
17
34
1.85
11519--11567
17
2.9
16
85
8
62
22
20
22
34
1.97
13421--13488
27
2.5
27
100
0
136
16
5
23
54
1.63
14841--14879
19
2.0
20
95
5
71
30
12
25
30
1.93
15261--15305
17
2.9
15
81
12
63
75
4
13
6
1.15
16677--16739
23
2.7
24
77
5
65
38
17
28
15
1.91
26120--26153
17
2.1
17
88
5
52
32
5
26
35
1.81
28057--28119
30
2.1
30
91
5
101
19
38
15
26
1.92
28484--28559
33
2.3
33
88
4
109
40
22
7
28
1.82
28559--28631
35
2.1
35
97
0
137
45
19
6
28
1.76
28554--28647
35
2.8
33
84
9
118
42
20
6
30
1.77
30247--30301
26
2.1
26
86
0
74
18
16
23
41
1.89
33561--34090
35
14.7
35
81
8
557
39
9
19
31
1.83
33598--33703
44
2.5
44
84
6
130
43
6
17
32
1.75
33672--34090
211
2.0
211
89
2
646
38
9
19
32
1.84
46421--46445
6
4.2
6
100
0
50
0
16
32
52
1.44
53207--53244
2
18.5
2
89
5
58
47
5
0
47
1.24
54481--54526
22
2.1
22
95
0
83
26
19
19
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55153--55276
33
3.7
33
82
8
135
24
41
26
7
1.80
56285--56318
9
3.7
9
88
7
50
85
0
0
14
0.60

Tables:   1

The End!