Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009367.1 Corchorus capsularis cultivar CVL-1 contig09388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18689

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4379--4412
8
4.1
8
85
7
50
23
2
14
58
1.50
5311--5373
33
1.9
33
90
0
99
9
23
44
22
1.82
5316--5402
33
2.6
33
82
7
97
9
24
45
20
1.80
5349--5454
33
3.2
32
80
5
95
9
26
41
22
1.84
5434--5475
21
2.0
21
90
0
66
16
30
30
21
1.95
9648--9686
20
2.0
19
85
5
51
51
12
30
5
1.62
11481--11523
19
2.4
18
80
7
52
32
6
6
53
1.55
13980--14194
35
6.2
35
85
1
281
40
22
20
15
1.91
13977--14194
69
3.1
69
81
4
260
40
22
20
16
1.91
15274--15319
15
3.1
15
84
6
58
0
23
0
76
0.79
16566--16624
14
4.3
13
81
10
64
38
15
6
38
1.74
16566--16624
27
2.1
27
87
9
84
38
15
6
38
1.74
16576--16634
28
2.1
28
81
6
66
33
15
11
38
1.84
18414--18514
36
2.8
36
89
5
152
28
16
6
47
1.73
18544--18686
36
4.1
35
82
5
180
25
19
10
44
1.83
18518--18689
70
2.4
72
82
7
210
25
18
11
45
1.82

Tables:   1

The End!