Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009368.1 Corchorus capsularis cultivar CVL-1 contig09389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64646

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2394--2445
3
17.3
3
100
0
104
67
0
0
32
0.91
2813--2854
16
2.7
15
79
17
50
35
30
19
14
1.91
4573--4633
30
2.0
30
100
0
122
32
22
9
34
1.87
5071--5159
32
2.8
32
92
0
151
51
17
10
20
1.74
9954--10053
42
2.4
42
89
1
155
32
26
1
41
1.63
10387--10440
27
2.0
27
85
0
72
38
5
20
35
1.76
12015--12060
23
2.0
23
100
0
92
60
4
13
21
1.49
13067--13112
2
25.0
2
83
16
64
45
0
0
54
0.99
13068--13123
25
2.3
26
87
9
82
44
3
0
51
1.18
15013--15071
30
2.0
30
90
6
93
22
30
16
30
1.96
15535--15617
33
2.5
33
75
7
87
48
21
8
21
1.76
19849--19900
24
2.2
24
89
0
77
36
0
40
23
1.55
21297--21375
29
2.6
31
76
11
83
21
26
12
39
1.89
29713--30106
197
2.0
197
98
0
761
43
10
16
29
1.82
30141--30243
43
2.4
44
81
4
120
37
10
11
39
1.77
30097--30243
22
6.8
21
73
11
111
38
9
13
38
1.77
35291--35339
21
2.3
21
82
6
55
40
16
28
14
1.87
38106--38144
15
2.6
15
87
0
60
12
0
76
10
1.01
44184--44248
18
3.3
18
67
29
51
23
44
23
9
1.81
45171--45204
8
4.1
8
85
7
50
58
11
2
26
1.47
53896--54169
136
2.0
139
90
3
439
51
11
7
29
1.65
54575--54606
2
16.5
2
93
6
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55598--55642
23
2.0
23
82
8
56
37
0
20
42
1.52
59903--59939
18
2.0
20
84
10
51
43
0
2
54
1.14
61293--61389
52
1.9
51
85
4
133
40
26
8
24
1.83
63503--63543
12
3.4
12
90
6
57
43
14
0
41
1.45
63576--63684
34
3.1
33
81
17
137
46
11
12
28
1.77
63576--63683
39
2.9
38
86
10
145
46
12
12
28
1.78

Tables:   1

The End!