Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009369.1 Corchorus capsularis cultivar CVL-1 contig09390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47421

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1011--1076
31
2.1
31
83
5
80
28
18
4
48
1.67
1415--1491
38
2.1
36
85
7
102
14
16
11
57
1.66
1628--1665
19
2.0
20
85
15
53
28
5
2
63
1.30
1836--1917
22
3.7
22
78
3
94
34
9
18
37
1.84
1998--2126
56
2.3
56
81
5
136
36
9
17
36
1.82
2087--2141
22
2.5
22
80
8
60
41
5
14
38
1.69
2227--2309
22
3.8
22
90
0
121
40
10
14
33
1.81
2405--2453
19
2.5
19
90
3
71
44
10
18
26
1.81
2405--2721
22
14.5
22
71
12
158
41
9
14
34
1.78
2227--2721
44
11.3
44
67
18
207
40
9
15
34
1.80
2686--2732
22
2.1
22
88
0
67
38
10
10
40
1.75
2738--2886
22
6.8
20
69
15
68
31
11
18
38
1.87
3108--3136
10
2.7
11
89
10
51
44
0
0
55
0.99
10496--10543
24
2.0
24
95
0
87
39
14
12
33
1.84
11193--11273
36
2.2
36
84
4
101
23
28
29
18
1.98
18036--18062
14
1.9
14
100
0
54
0
7
3
88
0.61
24298--24663
159
2.3
159
83
1
446
31
18
21
28
1.97
24298--24685
161
2.4
159
81
1
463
30
18
21
28
1.97
24804--24851
15
3.3
15
75
24
50
6
14
2
77
1.06
27871--28043
48
3.6
48
76
7
174
24
23
10
41
1.85
29843--29896
27
2.2
23
83
12
63
66
9
3
20
1.35
31208--31245
20
1.9
19
89
5
58
18
18
21
42
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31538--31594
13
4.3
13
75
4
51
8
22
21
47
1.78
32858--32896
19
2.1
19
95
0
69
41
5
2
51
1.38
34018--34075
28
2.1
28
100
0
116
13
13
31
41
1.84
39003--39027
2
12.5
2
100
0
50
52
0
0
48
1.00
39548--39586
6
6.3
6
91
8
53
87
0
0
12
0.55
39551--39586
7
5.4
7
87
12
58
86
0
0
13
0.58
39548--39586
13
3.1
12
89
10
60
87
0
0
12
0.55
41270--41302
1
33.0
1
100
0
66
100
0
0
0
0.00
41886--41922
5
7.4
5
100
0
74
0
18
21
59
1.38
41954--41992
3
13.0
3
100
0
78
66
0
33
0
0.92
42597--42629
17
1.9
17
100
0
66
12
9
6
72
1.26

Tables:   1

The End!