Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009373.1 Corchorus capsularis cultivar CVL-1 contig09394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42529

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53--90
11
3.3
12
89
10
62
52
5
0
42
1.24
56--88
17
1.9
17
93
0
57
54
6
0
39
1.25
1364--1581
78
2.8
77
89
2
321
27
14
22
34
1.94
2498--2595
50
2.0
50
97
0
187
45
20
2
31
1.62
4563--4599
7
5.3
7
100
0
74
27
16
27
29
1.97
14500--14570
31
2.3
31
87
2
99
18
22
25
33
1.96
17713--17737
7
3.6
7
100
0
50
24
32
32
12
1.91
20070--20101
2
16.0
2
100
0
64
50
0
0
50
1.00
23549--23782
122
1.9
124
84
5
321
29
13
20
35
1.92
23760--23943
78
2.4
78
90
3
289
26
16
21
35
1.94
23815--23982
39
4.3
40
73
16
163
27
17
22
32
1.96
35972--36030
25
2.4
25
91
5
95
35
23
0
40
1.55
36040--36107
26
2.6
26
88
0
100
54
8
1
35
1.41

Tables:   1

The End!