Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009376.1 Corchorus capsularis cultivar CVL-1 contig09397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41867

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4300--4363
31
2.0
32
84
3
85
31
21
17
29
1.96
9505--9581
31
2.5
31
95
0
136
36
14
14
35
1.86
15046--15145
51
2.0
51
94
4
175
37
22
9
32
1.85
15310--15336
13
2.1
13
100
0
54
14
0
14
70
1.17
18880--18914
11
3.2
11
83
0
52
77
17
5
0
0.96
18885--18943
16
3.7
16
72
17
50
69
18
10
1
1.25
20013--20048
2
18.0
2
100
0
72
50
0
0
50
1.00
20942--20998
25
2.3
25
79
11
64
19
8
0
71
1.11
22341--22385
15
3.0
15
75
12
56
35
4
2
57
1.31
22519--22563
23
2.0
22
82
4
54
20
4
6
68
1.29
23925--23992
26
2.6
26
88
0
100
33
2
10
52
1.50
24001--24060
25
2.5
25
86
5
79
43
0
20
36
1.52
26098--26140
17
2.4
17
81
18
52
37
13
9
39
1.78
26098--26140
16
2.8
16
86
13
63
37
13
9
39
1.78
30993--31042
21
2.5
20
78
12
57
46
20
2
32
1.62
31032--31074
17
2.4
17
81
18
52
37
13
9
39
1.78
31032--31074
16
2.8
16
86
13
63
37
13
9
39
1.78
36928--36953
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!