Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009378.1 Corchorus capsularis cultivar CVL-1 contig09399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46763

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16018--16077
22
2.7
22
86
0
84
31
31
5
31
1.79
21826--22318
22
22.6
22
67
12
171
36
15
9
38
1.80
22088--22174
45
2.0
44
83
2
111
37
16
8
37
1.78
22282--22333
22
2.4
21
78
9
59
44
11
9
34
1.73
22443--22571
66
2.0
66
81
3
152
33
13
10
41
1.80
22399--22565
88
1.9
88
81
4
203
32
13
10
42
1.79
22444--22818
22
16.9
22
67
15
100
34
16
9
39
1.80
22399--22626
22
10.3
22
72
13
137
33
14
10
42
1.79
22670--23037
22
17.0
21
68
15
101
38
17
8
35
1.80
22918--23032
44
2.6
44
78
5
117
36
16
9
37
1.81
23199--23236
19
2.0
20
85
15
53
63
2
5
28
1.30
23438--23502
30
2.1
31
91
2
105
49
4
18
27
1.67
23547--23584
19
2.0
20
85
15
53
60
2
5
31
1.33
35325--35359
15
2.4
14
90
9
52
82
0
17
0
0.66
35809--35872
2
32.5
2
87
3
94
48
3
48
0
1.17
41765--41794
2
15.5
2
93
6
53
46
0
0
53
1.00
42005--42099
26
3.6
26
94
5
156
35
9
12
42
1.76
42450--42528
3
26.3
3
97
0
122
67
5
0
27
1.12
42577--42607
14
2.2
14
100
0
62
25
19
6
48
1.72
45636--45827
98
2.0
98
95
0
348
30
11
10
47
1.74

Tables:   1

The End!