Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009381.1 Corchorus capsularis cultivar CVL-1 contig09402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57931

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1896--1924
3
9.7
3
100
0
58
68
0
31
0
0.89
2608--2700
33
2.6
35
77
19
102
16
7
49
26
1.72
2770--2844
21
3.4
21
77
5
78
12
1
58
28
1.42
2770--2848
18
3.5
24
69
25
64
12
1
59
26
1.41
3101--3170
24
2.9
24
73
0
59
18
2
64
14
1.41
3191--3246
27
2.1
27
82
0
67
23
5
58
12
1.54
3085--3288
66
3.0
66
83
3
203
21
3
59
15
1.51
3263--3357
27
3.5
27
92
0
136
22
9
54
13
1.67
3179--3318
69
2.0
69
84
0
181
22
6
57
13
1.59
3376--3435
21
2.9
21
87
0
84
35
21
35
8
1.84
5481--5510
3
10.0
3
100
0
60
0
0
66
33
0.92
6906--6945
18
2.3
17
83
8
53
25
2
7
65
1.32
6945--6997
25
2.1
25
89
6
81
37
9
7
45
1.65
17360--17393
1
34.0
1
100
0
68
0
0
0
100
0.00
29726--29802
31
2.5
31
85
6
93
45
18
5
31
1.71
38545--38629
31
2.8
31
81
13
97
32
17
28
21
1.96
51682--51749
36
2.0
34
85
8
93
44
5
19
30
1.74
57118--57164
24
1.9
25
95
4
87
27
10
10
51
1.70
57184--57248
27
2.4
27
86
2
94
53
7
32
6
1.54

Tables:   1

The End!