Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009389.1 Corchorus capsularis cultivar CVL-1 contig09410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77942

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603--654
19
2.8
18
80
8
59
59
0
3
36
1.16
10678--10756
30
2.7
30
78
5
90
44
2
6
46
1.42
10766--10808
23
1.9
22
86
13
61
72
4
4
18
1.20
18468--18850
109
3.5
109
94
3
646
49
1
10
38
1.48
24921--24954
14
2.2
16
90
10
54
58
11
14
14
1.63
28123--28205
29
2.8
30
78
12
84
48
15
8
27
1.74
38385--38552
82
2.0
82
97
0
318
31
8
14
45
1.75
47717--47940
109
2.1
109
100
0
448
37
5
11
45
1.63
48624--48702
29
2.7
29
86
4
95
25
17
6
50
1.69
49794--49828
16
2.1
16
89
10
52
42
17
0
40
1.49
49771--49806
2
18.5
2
94
5
65
50
0
0
50
1.00
53248--53281
15
2.3
15
89
0
50
38
2
0
58
1.13
54643--54718
32
2.3
32
82
6
91
53
11
7
26
1.64
55381--55411
2
16.0
2
93
6
55
48
0
0
51
1.00
64555--64801
78
3.2
78
94
1
415
36
13
0
49
1.48
67747--67773
2
13.5
2
100
0
54
51
0
0
48
1.00
68628--68707
30
2.6
31
86
2
99
30
13
10
46
1.76
69491--69522
10
3.1
11
82
17
50
28
0
6
65
1.16
69484--69522
20
2.0
20
94
0
69
25
0
7
66
1.18

Tables:   1

The End!