genome.fa.s9393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009393.1 Corchorus capsularis cultivar CVL-1 contig09414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111062

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5506--5544	13	3.0	13	85	10	53	66	2	25	5	1.25
6219--6250	8	4.0	8	91	0	55	75	0	21	3	0.95
6833--6925	5	17.6	5	74	20	75	74	3	16	6	1.16
6833--6925	16	5.8	16	74	13	93	74	3	16	6	1.16
6830--6920	31	2.9	32	96	3	175	71	3	16	8	1.25
7795--8214	69	6.2	68	88	6	584	26	28	17	27	1.98
7796--8214	138	3.1	138	91	3	665	26	28	17	27	1.98
8330--8369	20	2.0	20	90	0	62	22	22	30	25	1.99
8816--8882	27	2.5	27	82	4	82	14	14	25	44	1.84
9415--9453	20	2.0	20	94	0	69	30	10	17	41	1.83
13807--13841	12	2.9	12	82	0	52	57	11	17	14	1.66
25531--25658	59	2.2	59	91	1	213	17	22	3	57	1.54
28125--28181	29	2.0	29	92	0	96	21	22	15	40	1.91
32184--32225	17	2.6	17	85	7	52	38	0	11	50	1.40
32611--32816	66	3.1	66	92	2	324	46	16	8	28	1.76
33040--34041	440	2.3	433	81	5	1079	30	13	13	42	1.82
34776--34847	23	3.0	24	87	6	110	13	31	19	34	1.91
35719--35767	25	2.0	25	95	0	89	14	32	18	34	1.91
39928--40359	195	2.2	195	86	3	593	29	18	19	33	1.95
39928--40441	195	2.6	194	81	6	481	29	18	17	34	1.94
45228--45254	2	13.5	2	100	0	54	51	0	0	48	1.00
45274--45375	31	3.4	29	72	5	78	37	15	17	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45274--45435	60	2.7	60	88	0	225	35	17	18	28	1.93
45332--45433	31	3.4	29	71	15	91	35	17	20	26	1.95
45468--45632	31	5.6	29	70	15	124	29	18	17	35	1.94
45471--45633	60	2.7	58	87	7	247	29	18	16	35	1.93
45499--45597	29	3.3	29	69	15	94	32	18	14	35	1.90
49393--49529	31	4.5	31	88	0	179	20	27	25	26	1.99
49393--49525	30	4.4	31	88	0	171	20	26	26	27	1.99
49503--49573	24	3.0	24	95	0	124	18	28	23	29	1.98
51698--51725	2	14.0	2	100	0	56	50	0	0	50	1.00
56003--56043	15	2.6	16	92	3	66	4	14	31	48	1.65
56567--56638	31	2.3	31	73	4	74	58	12	4	25	1.52
56847--56881	16	2.2	16	94	0	61	8	11	42	37	1.72
58662--58714	27	2.0	27	100	0	106	60	3	22	13	1.49
58845--58977	44	3.0	44	94	2	232	35	19	9	35	1.85
61537--61576	20	2.0	20	90	0	62	35	20	2	42	1.65
64724--64835	56	2.0	56	85	3	154	50	9	16	23	1.75
64774--64910	71	1.9	70	82	8	170	48	6	18	27	1.72
64845--64910	31	2.1	31	86	8	89	48	4	19	27	1.68
64774--64929	71	2.2	71	78	11	160	48	7	17	26	1.73
65096--65190	35	2.7	35	88	0	145	56	4	23	15	1.56
65170--65274	49	2.1	50	84	7	133	58	4	17	20	1.56
65245--65341	21	4.5	21	81	2	104	49	10	19	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65334--65376	22	2.0	22	85	0	59	51	6	23	18	1.70
65385--65462	15	5.9	15	68	26	59	55	5	15	24	1.61
65385--65425	14	2.9	15	85	10	59	56	4	17	21	1.60
65348--65543	51	3.7	52	75	14	184	54	6	18	19	1.65
65380--65550	36	4.7	36	80	7	202	54	7	16	20	1.66
65400--65486	22	4.3	21	70	21	69	55	4	18	21	1.61
65318--65550	110	2.1	110	90	1	369	53	8	18	20	1.69
65469--65508	16	2.6	16	88	4	64	57	7	17	17	1.62
65400--65517	60	2.0	59	86	3	166	55	5	16	21	1.62
65674--65720	13	3.5	13	72	16	51	61	0	25	12	1.31
66318--66359	21	2.0	21	100	0	84	19	9	33	38	1.84
69123--69198	28	2.8	26	82	7	107	46	14	1	38	1.53
71117--71230	60	1.9	60	92	3	194	41	12	13	33	1.81
74460--74502	15	2.6	18	75	21	56	46	11	16	25	1.80
74466--74499	15	2.3	15	94	0	59	47	11	20	20	1.81
77532--77571	18	2.2	18	86	8	55	7	12	2	77	1.07
86130--86184	26	2.1	26	80	12	60	61	7	3	27	1.39
86730--86759	2	15.0	2	100	0	60	50	0	0	50	1.00
88906--89175	142	1.9	142	95	1	488	40	18	12	29	1.87
89368--89413	23	2.0	23	100	0	92	34	8	8	47	1.65
91728--91755	7	4.0	7	100	0	56	57	14	14	14	1.66
110092--110396	42	7.2	41	73	13	253	25	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109946--110355	174	2.4	171	88	5	608	27	18	16	38	1.92
110267--110396	40	3.2	41	91	7	221	22	19	18	40	1.92
110092--110525	213	2.0	211	89	3	656	29	17	15	37	1.91

Tables:   1

The End!