Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009399.1 Corchorus capsularis cultivar CVL-1 contig09420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31312

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3715--3740
7
3.7
7
100
0
52
76
0
0
23
0.78
9985--10058
26
2.8
27
83
6
98
20
20
22
36
1.95
10217--10321
52
2.0
52
100
0
210
26
17
17
39
1.91
14036--14110
27
2.8
27
93
0
132
42
25
14
17
1.87
15906--16185
138
2.0
138
97
0
533
29
14
16
38
1.89
16737--16766
3
10.3
3
92
7
53
33
0
0
66
0.92
16738--16769
14
2.3
14
100
0
64
34
0
0
65
0.93
16774--16811
6
6.5
6
87
6
60
0
26
0
73
0.83
16918--16954
20
1.9
19
89
10
58
0
18
0
81
0.70
16912--16973
24
2.4
27
81
13
94
0
22
0
77
0.77
16916--16973
18
3.4
17
79
9
55
0
20
0
79
0.74
23206--23238
3
11.3
3
93
6
59
33
0
0
66
0.92
23210--23241
14
2.3
14
100
0
64
34
0
0
65
0.93
23206--23247
14
3.2
13
83
12
50
30
2
0
66
1.04
23322--23386
31
2.1
31
91
0
103
12
38
29
20
1.89
23425--23468
18
2.3
20
88
7
65
0
22
0
77
0.77
24784--24850
30
2.2
29
80
15
75
53
13
20
11
1.71
26329--26364
19
1.9
18
88
5
54
33
22
2
41
1.68
26738--27152
69
6.1
68
87
5
543
26
27
18
27
1.98
26738--27152
135
3.0
137
86
4
568
26
27
18
27
1.98
27271--27509
47
5.0
47
86
7
313
20
24
19
35
1.95
27586--27625
15
2.6
15
88
4
62
80
0
17
2
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28348--28423
28
2.7
28
97
0
143
18
13
26
42
1.87

Tables:   1

The End!