genome.fa.s9401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009401.1 Corchorus capsularis cultivar CVL-1 contig09422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27525

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2161--2205	13	3.5	13	90	3	74	22	13	8	55	1.65
5742--5790	14	3.7	13	78	13	55	42	8	12	36	1.72
7913--8034	8	15.2	8	76	5	88	27	24	2	45	1.66
7924--8032	48	2.3	48	82	4	139	27	25	2	44	1.68
8069--8351	8	34.2	8	67	10	133	27	21	4	45	1.72
8069--8158	24	3.7	24	91	2	153	30	22	3	44	1.69
8136--8245	44	2.5	44	90	0	166	25	20	5	48	1.71
8377--8417	8	5.1	8	87	0	64	26	24	2	46	1.65
8381--8426	24	1.9	24	95	0	83	30	23	4	41	1.74
8377--8426	16	3.1	16	88	0	73	28	24	4	44	1.72
8409--8537	44	3.2	44	65	28	122	24	17	16	41	1.89
8453--8502	8	6.2	8	80	0	64	26	22	6	46	1.74
8332--8690	76	4.8	75	86	5	518	25	18	14	42	1.87
8533--8578	24	1.9	24	95	0	83	30	21	4	43	1.72
8531--8577	16	2.9	16	83	0	58	29	23	4	42	1.73
8332--8689	144	2.4	144	92	4	583	25	18	14	42	1.88
8605--8646	8	5.2	8	82	0	57	26	21	4	47	1.70
8607--8646	16	2.5	16	95	0	71	27	22	5	45	1.73
8548--8689	68	2.1	68	94	0	248	24	18	14	42	1.87
8639--8769	36	3.4	37	71	16	113	22	16	20	40	1.91
8629--8762	44	3.2	43	72	16	138	23	16	20	40	1.91
10428--10520	49	1.9	49	84	6	127	23	7	25	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18662--18695	4	8.5	4	100	0	68	26	0	23	50	1.50
18861--18909	22	2.2	22	92	0	80	32	14	22	30	1.93
21362--21458	29	3.1	29	77	11	86	76	1	19	3	0.98
21356--21454	6	16.3	6	73	15	71	75	1	20	3	0.99

Tables:   1

The End!