Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009405.1 Corchorus capsularis cultivar CVL-1 contig09426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2825
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2337 original size:19 final size:19

Alignment explanation


    Indices: 2297--2334  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       2287 GATTTATCCT

                               
       2297 ATCTATCTGTTGAATTTGA
          1 ATCTATCTGTTGAATTTGA

                        *      
       2316 ATCT-TCTGTTGGATTTGA
          1 ATCTATCTGTTGAATTTGA

             
       2334 A
          1 A

       2335 ATCCTATTTC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47


Consensus pattern (19 bp):   
ATCTATCTGTTGAATTTGA
Done.