Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009406.1 Corchorus capsularis cultivar CVL-1 contig09427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134111

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6048--6110
31
2.2
29
83
11
76
50
4
25
19
1.66
12855--12880
2
13.0
2
100
0
52
50
0
0
50
1.00
13404--13458
29
1.9
28
88
3
83
45
16
18
20
1.86
17179--17277
48
2.1
48
92
0
162
35
14
20
30
1.92
21051--21090
21
2.0
20
85
5
53
7
45
2
45
1.45
22658--22700
19
2.4
17
80
7
50
34
2
51
11
1.51
24986--25167
93
2.0
93
84
2
240
40
12
20
26
1.88
30396--30451
25
2.2
25
81
6
69
46
1
10
41
1.49
31525--31561
2
20.0
2
84
15
53
45
0
0
54
1.00
31513--31561
16
3.0
16
90
3
71
40
0
0
59
0.98
31512--31560
5
9.2
5
86
8
53
38
0
0
61
0.96
32937--33000
31
2.1
30
88
11
94
21
15
14
48
1.80
32935--33002
33
2.1
32
94
5
120
20
14
13
51
1.76
42093--42126
2
17.0
2
100
0
68
50
0
0
50
1.00
50163--50220
18
3.3
18
66
9
57
32
12
18
36
1.88
50160--50226
34
2.0
34
100
0
134
29
14
17
37
1.91
55470--55548
40
2.0
40
100
0
158
36
22
7
32
1.83
55918--55950
14
2.4
14
100
0
66
51
9
0
39
1.34
57991--58053
33
1.9
33
86
0
90
20
19
14
46
1.84
61201--61531
20
16.5
20
74
4
274
38
6
26
28
1.82
61202--61532
40
8.2
40
90
3
506
38
6
26
28
1.81
61231--61531
159
1.9
159
92
2
467
37
6
26
28
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63092--63133
6
7.2
6
83
5
50
0
4
16
78
0.91
63090--63133
23
1.9
23
90
0
70
0
6
15
77
0.97
63333--63421
43
2.1
43
95
0
160
39
21
7
31
1.82
65341--65510
49
3.5
49
95
1
290
37
25
29
7
1.84
65488--65535
24
2.0
24
100
0
96
45
25
25
4
1.71
67076--67540
239
1.9
240
95
0
833
32
18
16
32
1.94
71738--71781
24
1.9
23
90
9
72
22
31
18
27
1.97
71730--71888
79
2.0
78
90
1
246
25
22
18
33
1.97
74601--75034
230
1.9
229
97
1
816
41
13
20
24
1.89
84238--84266
8
3.8
8
95
4
51
0
0
6
93
0.36
102591--102664
29
2.6
28
74
6
76
18
21
17
41
1.90
103897--103935
19
2.1
19
100
0
78
15
10
25
48
1.76
112797--112853
25
2.3
25
85
8
73
10
8
3
77
1.11
118952--119102
50
3.0
50
89
1
223
35
11
18
35
1.87
119331--119444
52
2.4
47
81
11
124
22
8
25
42
1.82
119352--119452
52
1.9
52
89
0
157
23
7
27
40
1.82
119617--119664
24
2.0
24
100
0
96
20
20
12
45
1.83

Tables:   1

The End!