Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009408.1 Corchorus capsularis cultivar CVL-1 contig09429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56676

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
456--486
15
2.1
15
100
0
62
41
12
25
19
1.87
1300--1431
71
1.9
71
87
3
194
18
12
15
53
1.74
1371--1566
87
2.2
88
89
1
297
23
11
17
46
1.81
18511--18670
74
2.2
74
89
5
254
31
1
28
38
1.65
18914--19060
74
2.0
74
97
0
276
35
12
17
35
1.87
19396--19458
20
3.2
20
65
17
60
33
4
25
36
1.77
19877--19937
30
2.0
30
96
0
113
42
6
19
31
1.77
22827--23722
329
2.7
324
77
8
762
37
15
13
34
1.86
24540--24564
13
1.9
13
100
0
50
8
16
0
76
1.02
29111--29266
32
4.8
32
67
11
93
28
19
19
32
1.96
29187--29266
33
2.4
33
85
0
106
28
23
20
27
1.99
29332--29394
33
1.9
33
86
0
90
31
15
25
26
1.96
29946--30011
33
2.0
33
96
0
123
53
10
15
21
1.72
30897--30938
21
2.0
21
90
0
66
59
7
2
30
1.37
31762--31931
93
1.8
93
89
0
268
40
11
21
26
1.87
35515--35623
29
3.7
29
81
3
110
18
30
16
34
1.93
35544--35622
29
2.7
29
88
2
113
18
31
16
32
1.94
35817--35915
29
3.3
30
82
4
119
35
17
30
17
1.93
37203--38100
333
2.7
330
81
5
1004
37
16
13
31
1.88
42831--42879
14
3.6
14
81
15
50
38
12
8
40
1.72
44449--44489
21
2.0
21
90
0
64
56
24
12
7
1.61
44478--44572
47
2.0
47
89
0
145
47
23
17
11
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51937--52024
46
1.9
46
97
0
167
37
18
9
35
1.82
55386--55458
32
2.4
30
77
18
80
31
5
23
39
1.77
56528--56582
17
3.2
17
86
0
74
36
18
21
23
1.95

Tables:   1

The End!