Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009411.1 Corchorus capsularis cultivar CVL-1 contig09432, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3855
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26


Found at i:2301 original size:15 final size:15

Alignment explanation


    Indices: 2290--2319  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2280 AGTAAAAATT

                           
       2290 GAAAAAAGAAAAAAG
          1 GAAAAAAGAAAAAAG

                  *        
       2305 GAAAAAGGAAAAAAG
          1 GAAAAAAGAAAAAAG

       2320 AAGAAGAAGA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (15 bp):   
GAAAAAAGAAAAAAG

Found at i:3827 original size:2 final size:2

Alignment explanation


    Indices: 3820--3855  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       3810 AAACTCAGGC

                                                                 
       3820 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.