Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009412.1 Corchorus capsularis cultivar CVL-1 contig09433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32540

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1006--1195
38
5.1
38
87
5
271
49
7
15
27
1.71
1027--1273
73
3.3
73
81
7
284
47
8
17
27
1.75
1006--1207
111
1.8
111
90
2
325
48
7
17
26
1.74
1290--1364
32
2.3
33
93
2
125
57
4
16
22
1.55
1614--1699
14
6.3
13
71
18
59
54
5
19
19
1.64
1673--1703
14
2.2
14
100
0
62
51
6
22
19
1.69
1695--1851
42
3.7
41
80
11
165
47
3
24
24
1.69
1761--1811
25
2.0
25
92
0
84
54
0
19
25
1.44
1788--1828
17
2.4
17
83
0
55
51
0
19
29
1.47
1792--1914
62
2.0
61
81
10
142
50
3
21
24
1.64
1898--1928
15
2.1
15
93
0
53
64
0
16
19
1.29
7362--7391
6
5.2
6
96
4
53
0
50
16
33
1.46
15446--15489
21
2.1
21
83
8
54
18
31
9
40
1.81
16052--16095
22
2.0
22
82
8
54
38
11
6
43
1.67
16051--16192
60
2.3
60
90
2
221
33
14
8
44
1.75
16155--16362
22
9.5
22
71
13
74
33
15
10
39
1.82
16219--16274
20
2.7
21
80
5
60
28
12
7
51
1.65
16411--16710
22
13.8
22
73
12
183
35
15
9
40
1.79
16810--16919
58
1.9
58
84
0
148
33
13
9
43
1.76
16868--16920
22
2.4
22
81
12
65
35
11
9
43
1.73
16978--17073
38
2.6
37
83
3
120
54
10
19
15
1.70
17196--17261
31
2.1
31
86
5
89
45
4
18
31
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17845--17893
15
3.2
15
74
5
53
38
34
6
20
1.77
24558--25252
350
2.0
351
98
1
1338
25
22
18
34
1.96
31322--31392
29
2.4
30
79
6
83
22
9
26
40
1.85

Tables:   1

The End!