Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009413.1 Corchorus capsularis cultivar CVL-1 contig09434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3296
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32


Found at i:1037 original size:77 final size:77

Alignment explanation


    Indices: 921--1083  Score: 308
    Period size: 77  Copynumber: 2.1  Consensus size: 77

        911 TTTAGAATTT

                                                                             
        921 AATGTAAAAAATTACCCTTCTACAAGATGAGTACGAAATCTAGCTCTTTTATTATATACTAGTAT
          1 AATG-AAAAAATTACCCTTCTACAAGATGAGTACGAAATCTAGCTCTTTTATTATATACTAGTAT

                         
        986 TTATTTCCACGTG
         65 TTATTTCCACGTG

                           *                                                 
        999 AATGAAAAAATTACCTTTCTACAAGATGAGTACGAAATCTAGCTCTTTTATTATATACTAGTATT
          1 AATGAAAAAATTACCCTTCTACAAGATGAGTACGAAATCTAGCTCTTTTATTATATACTAGTATT

                        
       1064 TATTTCCACGTG
         66 TATTTCCACGTG

                    
       1076 AATGAAAA
          1 AATGAAAA

       1084 TTAAAATAAT


Statistics
Matches: 84,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  77   80  0.95
  78    4  0.05

ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36


Consensus pattern (77 bp):   
AATGAAAAAATTACCCTTCTACAAGATGAGTACGAAATCTAGCTCTTTTATTATATACTAGTATT
TATTTCCACGTG
Done.