Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009419.1 Corchorus capsularis cultivar CVL-1 contig09440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35287

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1750--1776
2
13.5
2
100
0
54
48
0
0
51
1.00
2122--2159
19
2.0
19
94
0
67
23
5
18
52
1.65
6733--6801
26
2.6
26
83
4
84
34
7
10
47
1.65
7015--7058
16
2.8
16
82
6
54
72
0
4
22
1.02
7550--7587
11
3.5
11
85
10
51
57
2
0
39
1.12
12174--12224
2
25.5
2
95
0
93
0
50
0
49
1.00
17478--17511
16
2.1
16
88
0
50
11
26
5
55
1.58
17556--17662
53
2.0
53
94
0
187
43
10
6
39
1.65
17626--17655
14
2.1
14
93
0
51
36
10
6
46
1.64
18022--18077
16
3.5
16
71
9
51
41
28
7
23
1.80
18013--18109
32
3.0
32
84
0
131
38
31
9
20
1.84
18068--18109
16
2.6
17
74
11
52
40
30
7
21
1.80
23379--23422
22
2.0
22
82
8
54
43
11
2
43
1.53
23378--23529
62
2.5
62
91
2
234
34
13
10
41
1.79
23564--23606
19
2.4
19
88
7
63
32
9
6
51
1.61
23614--24066
22
21.0
21
66
17
148
36
16
10
37
1.82
24080--24224
22
6.6
22
78
4
132
32
13
11
43
1.78
24080--24224
44
3.3
44
75
9
152
32
13
11
43
1.78
24496--24563
31
2.2
31
84
7
95
48
2
16
32
1.61
33496--33527
1
32.0
1
100
0
64
0
0
0
100
0.00
33787--33822
10
3.6
10
92
0
54
38
22
5
33
1.77
34308--34377
34
2.2
32
85
12
88
30
14
12
42
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34319--34390
17
4.2
17
83
13
94
25
12
18
44
1.84

Tables:   1

The End!