Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009421.1 Corchorus capsularis cultivar CVL-1 contig09442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65723

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3980--4009
12
2.5
12
94
0
51
30
6
10
53
1.60
4291--4326
18
2.0
18
88
0
54
47
8
5
38
1.57
6550--6590
6
7.0
6
97
2
75
34
0
14
51
1.43
7279--7349
3
23.3
3
91
8
117
67
0
1
30
0.99
10528--10640
56
2.0
55
89
1
172
49
7
18
24
1.72
10596--10748
34
4.5
34
68
16
118
50
7
16
25
1.71
10585--10785
103
2.0
103
96
0
375
49
7
18
24
1.73
10982--11021
16
2.6
15
80
7
53
62
0
17
20
1.33
11170--11246
24
3.1
25
78
12
95
55
2
18
23
1.54
11226--11271
16
2.6
18
90
10
69
47
4
21
26
1.69
11303--11342
19
2.2
19
90
4
64
57
0
12
30
1.36
11350--11380
15
2.1
15
93
0
53
64
0
16
19
1.29
11386--11466
34
2.4
34
100
0
162
53
2
20
23
1.58
12208--12596
66
5.8
66
78
7
388
42
16
17
23
1.88
12223--12596
136
2.8
136
80
9
397
42
16
17
23
1.88
14005--14052
20
2.4
20
85
0
60
50
18
18
12
1.78
16526--16551
2
13.0
2
100
0
52
50
0
0
50
1.00
16989--17366
192
2.0
192
98
0
738
40
14
14
29
1.87
22827--22868
22
2.0
21
85
4
57
23
0
26
50
1.50
23728--23770
13
3.2
13
84
15
52
32
0
6
60
1.23
25169--25219
21
2.4
22
77
9
61
17
31
29
21
1.96
30186--30211
2
13.0
2
100
0
52
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32474--32517
16
2.8
17
83
13
58
36
18
0
45
1.49
39488--39513
10
2.6
10
100
0
52
30
7
23
38
1.83
39624--39662
12
3.6
12
74
25
50
30
15
28
25
1.96
42465--42672
114
1.8
114
85
2
292
36
8
20
34
1.84
50482--50508
2
13.5
2
100
0
54
51
0
0
48
1.00
59304--59369
18
3.7
18
85
0
87
27
15
25
31
1.95
59498--59557
15
4.0
15
88
0
84
23
20
40
16
1.91
64530--64566
19
2.0
18
89
5
56
40
2
21
35
1.68

Tables:   1

The End!