Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009424.1 Corchorus capsularis cultivar CVL-1 contig09445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1463
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30


Found at i:56 original size:28 final size:28

Alignment explanation


    Indices: 1--75  Score: 116
    Period size: 28  Copynumber: 2.7  Consensus size: 28

                                    *   
          1 GGGCATTTTGGTCA-TTTTACATTCAAG
          1 GGGCATTTTGGTCATTTTTACATTAAAG

               *               *        
         28 GGGTATTTTGGTCATTTTTGCATTAAAG
          1 GGGCATTTTGGTCATTTTTACATTAAAG

                                
         56 GGGCATTTTGGTCATTTTTA
          1 GGGCATTTTGGTCATTTTTA

         76 GTCCATTTTT


Statistics
Matches: 42,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  27   13  0.31
  28   29  0.69

ACGTcount: A:0.20, C:0.11, G:0.24, T:0.45


Consensus pattern (28 bp):   
GGGCATTTTGGTCATTTTTACATTAAAG
Done.