genome.fa.s9426.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009426.1 Corchorus capsularis cultivar CVL-1 contig09447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33431

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815--850	19	1.9	18	88	5	54	33	22	2	41	1.68
1464--1540	33	2.3	33	95	2	136	7	24	44	23	1.80
6676--6701	5	5.2	5	100	0	52	19	0	0	80	0.71
7770--7807	12	3.2	12	96	0	67	15	26	31	26	1.96
15483--16081	35	17.7	34	84	9	669	38	10	18	32	1.85
15484--16081	171	3.5	170	85	6	750	38	10	18	32	1.85
17856--17907	27	1.9	27	88	0	77	30	32	1	34	1.69
18311--18358	20	2.3	21	85	3	62	66	4	8	20	1.35
19317--19401	33	2.6	32	75	10	109	29	22	20	28	1.98
21168--21215	19	2.5	19	96	0	87	22	22	33	20	1.97
21203--21485	89	3.2	89	89	3	417	25	13	29	31	1.94
21251--21392	73	1.9	73	83	5	180	27	15	27	29	1.96
21340--21482	73	1.9	74	87	1	207	25	13	30	30	1.94
21323--21514	105	1.8	106	85	5	273	25	13	29	31	1.94
21233--21501	16	17.7	15	74	15	117	25	14	28	31	1.95
21356--21465	57	1.9	57	81	7	134	25	13	30	30	1.94
21424--21500	15	4.9	16	84	7	104	25	14	28	31	1.95
21411--21515	32	3.3	32	86	2	140	23	12	31	32	1.92
21428--21515	15	5.5	17	80	9	78	23	10	31	34	1.88
22371--22409	21	1.9	19	85	10	51	43	20	10	25	1.83
24107--24276	90	1.9	90	100	0	340	23	20	20	35	1.96
25482--25529	20	2.3	21	89	3	71	66	6	8	18	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31760--31793	13	2.6	14	90	9	54	32	0	8	58	1.29
32888--33101	106	2.0	106	88	0	320	41	20	15	21	1.90

Tables:   1

The End!