Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009431.1 Corchorus capsularis cultivar CVL-1 contig09452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57802

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7729--7927
109
1.8
108
93
1
344
41
13
16
28
1.86
11264--11350
16
5.6
16
78
9
99
37
41
14
5
1.70
11264--11367
31
3.3
32
79
10
92
36
42
15
5
1.71
11247--11367
47
2.6
47
82
10
149
34
43
16
4
1.70
13686--13745
31
1.9
31
93
0
102
36
8
15
40
1.77
13774--13844
37
1.9
37
91
0
115
38
8
15
38
1.78
15021--15084
31
2.0
32
90
3
103
39
6
20
34
1.78
16227--16286
31
1.9
31
89
0
93
36
8
13
41
1.74
16304--16384
36
2.2
36
89
4
119
39
8
16
35
1.79
17375--17416
16
2.7
15
76
20
50
4
7
11
76
1.15
17369--17427
30
1.9
30
83
10
75
6
5
15
72
1.23
19072--19101
1
30.0
1
100
0
60
100
0
0
0
0.00
19740--19856
57
2.1
57
90
0
180
23
14
30
31
1.94
20401--20677
107
2.7
104
84
8
386
41
8
7
41
1.65
22215--22257
12
3.6
12
83
0
59
30
20
16
32
1.95
22560--22598
1
39.0
1
94
0
60
94
0
5
0
0.29
23087--23158
29
2.4
30
77
11
94
44
16
2
36
1.63
24539--24603
22
3.0
22
77
11
62
47
9
4
38
1.56
24997--25025
2
14.5
2
100
0
58
48
0
0
51
1.00
26454--26488
8
4.4
8
86
13
54
77
0
0
22
0.78
26446--26482
15
2.5
15
86
0
56
78
2
0
18
0.87
28272--28322
25
2.0
25
100
0
102
47
15
7
29
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28701--28760
12
4.8
13
83
8
88
43
13
16
26
1.85
28691--28784
25
3.8
25
81
8
111
41
12
18
27
1.86
28691--28784
12
7.6
12
73
11
73
41
12
18
27
1.86
29212--29296
31
2.8
31
85
1
118
38
17
10
32
1.84
30964--31012
24
2.0
24
96
0
89
26
38
18
16
1.91
30997--31027
15
2.1
15
93
0
53
35
32
19
12
1.90
30973--31051
39
2.0
39
97
0
149
31
35
17
15
1.91
30964--31096
63
2.1
63
94
1
230
29
35
18
16
1.93
31012--31075
24
2.7
24
95
0
110
29
35
18
15
1.92
31060--31090
15
2.1
15
93
0
53
32
32
19
16
1.94
33980--34963
491
2.0
492
95
1
1776
22
26
15
35
1.94
37439--37495
16
3.6
15
79
9
60
7
15
36
40
1.75
38248--38272
2
12.5
2
100
0
50
48
0
0
52
1.00
38354--38412
14
4.0
14
75
16
57
38
0
3
57
1.15
43086--43133
2
24.0
2
100
0
96
0
0
50
50
1.00
46747--46815
36
1.9
36
100
0
138
65
5
5
23
1.37
47778--47805
13
2.2
13
100
0
56
67
0
0
32
0.91
48159--49162
438
2.3
435
84
4
1270
31
13
13
42
1.82
57188--57223
1
36.0
1
100
0
72
0
0
0
100
0.00

Tables:   1

The End!