Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009432.1 Corchorus capsularis cultivar CVL-1 contig09453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2203
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40


Found at i:1717 original size:27 final size:26

Alignment explanation


    Indices: 1651--1720  Score: 70
    Period size: 26  Copynumber: 2.7  Consensus size: 26

       1641 TTTGATTGCC

                      *               
       1651 AATTACCATTGTTTACTCTATGTACT
          1 AATTACCATTTTTTACTCTATGTACT

            *       **           *      
       1677 GATTACCAAATTTTACTCT-TTTACTTT
          1 AATTACCATTTTTTACTCTATGTAC--T

                             
       1704 AATTACCATTTTTTACT
          1 AATTACCATTTTTTACT

       1721 GTCCCTTTTC


Statistics
Matches: 34,  Mismatches: 8, Indels: 3
        0.76            0.18        0.07

Matches are distributed among these distances:
  25    4  0.12
  26   15  0.44
  27   15  0.44

ACGTcount: A:0.27, C:0.19, G:0.04, T:0.50


Consensus pattern (26 bp):   
AATTACCATTTTTTACTCTATGTACT

Found at i:1988 original size:24 final size:24

Alignment explanation


    Indices: 1961--2007  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1951 TCTCTTACTT

                                     
       1961 TGAATCTCAATTA-TCACTTTAATA
          1 TGAATCTCAATTACT-ACTTTAATA

                   *               
       1985 TGAATCTTAATTACTACTTTAAT
          1 TGAATCTCAATTACTACTTTAAT

       2008 TACCAATTTC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  24   20  0.95
  25    1  0.05

ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45


Consensus pattern (24 bp):   
TGAATCTCAATTACTACTTTAATA
Done.