Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009433.1 Corchorus capsularis cultivar CVL-1 contig09454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49293

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7774--7847
27
2.8
26
80
6
96
17
9
22
50
1.75
21844--22369
267
2.0
267
97
0
989
23
21
16
38
1.93
24616--24650
13
2.7
13
95
0
61
60
8
11
20
1.57
33290--33342
24
2.2
25
83
10
65
22
3
7
66
1.34
33286--33333
11
3.8
13
83
13
64
25
6
6
62
1.42
33530--33567
18
2.1
18
100
0
76
50
21
5
23
1.69
38878--38916
20
2.0
20
89
0
60
41
20
10
28
1.85
39057--39090
14
2.4
14
95
0
59
50
14
11
23
1.76
39428--39500
28
2.6
28
83
8
87
46
20
15
17
1.84
42853--42949
27
3.6
27
84
5
126
15
17
21
45
1.85
44654--44843
51
3.8
50
78
6
188
42
5
15
36
1.70
45443--45767
55
6.2
55
80
12
369
48
7
19
24
1.75
45443--45815
55
7.4
47
77
13
223
48
8
19
24
1.75
46036--46082
24
2.0
24
91
0
76
42
4
17
36
1.68
46275--46329
16
3.6
16
72
25
55
54
0
23
21
1.45
46267--46433
26
6.2
26
72
17
110
53
3
21
21
1.61
46267--46331
29
2.3
27
85
12
87
56
0
23
20
1.42

Tables:   1

The End!