Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009436.1 Corchorus capsularis cultivar CVL-1 contig09457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93025

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5267--5312
21
2.1
21
88
4
65
19
30
32
17
1.95
6127--6173
22
2.1
22
88
0
67
40
10
8
40
1.70
6402--6488
23
3.7
23
79
13
97
39
16
9
35
1.80
6515--6707
22
8.9
22
74
10
148
33
16
9
40
1.80
6386--6678
44
6.7
44
75
13
171
36
14
9
39
1.78
6540--6684
66
2.2
67
83
10
176
35
14
8
41
1.77
6667--6736
19
3.6
20
88
7
108
25
18
10
45
1.80
6842--6915
22
3.4
22
90
1
123
37
12
6
43
1.69
6818--6916
44
2.2
44
82
3
119
36
11
7
45
1.67
6842--6943
44
2.3
44
84
3
125
35
14
8
41
1.77
6842--6943
22
4.6
22
85
0
87
35
14
8
41
1.77
7072--7192
22
5.5
22
71
16
83
42
18
4
35
1.69
7246--7429
22
8.3
22
81
5
124
38
19
9
32
1.84
7246--7431
66
2.8
66
79
9
173
38
19
9
32
1.84
7883--7936
27
1.9
29
85
7
76
50
1
1
46
1.23
7958--8008
26
2.0
26
92
0
84
39
11
11
37
1.79
9194--9259
34
1.9
35
90
3
107
54
9
19
16
1.68
9970--9998
5
6.0
5
92
8
51
0
0
37
62
0.96
9969--10001
9
3.6
9
92
8
57
0
0
33
66
0.92
17965--18015
27
1.9
27
88
4
77
17
1
27
52
1.55
18330--19033
378
1.9
373
86
7
1017
34
12
18
33
1.89
22547--22589
21
2.0
21
100
0
86
27
23
23
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25458--25493
17
2.1
17
100
0
72
52
5
5
36
1.48
25579--25853
109
2.5
109
92
4
446
37
11
1
49
1.49
25945--26027
24
3.3
24
64
23
62
26
8
7
57
1.54
32446--32514
29
2.4
29
87
0
93
37
28
13
20
1.90
47082--47129
17
2.8
17
93
0
78
10
10
33
45
1.72
48915--48956
17
2.5
17
84
0
57
21
35
14
28
1.92
50916--51000
34
2.5
34
96
0
161
15
31
5
47
1.69
50911--51024
34
3.0
40
80
16
152
17
29
6
46
1.72
54555--54603
22
2.2
22
88
0
71
53
0
40
6
1.26
58209--58233
2
12.5
2
100
0
50
52
0
0
48
1.00
61097--61134
19
2.0
20
94
5
69
50
7
10
31
1.66
63354--63397
16
2.9
15
80
6
52
29
13
15
40
1.86
72430--72473
22
2.0
23
90
4
72
77
0
2
20
0.88
80116--80163
8
6.1
8
81
13
55
18
27
0
54
1.44
80117--80160
14
2.9
15
83
13
54
18
27
0
54
1.44
92730--92771
19
2.3
19
84
12
52
57
2
16
23
1.51
92894--92995
33
3.1
32
79
6
107
13
43
32
10
1.79
92894--93007
33
3.5
33
79
5
99
13
40
35
11
1.80

Tables:   1

The End!