Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009438.1 Corchorus capsularis cultivar CVL-1 contig09459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59662

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3464--3619
80
2.0
80
97
2
296
33
21
18
26
1.96
3920--3947
2
14.0
2
100
0
56
50
0
0
50
1.00
35661--35704
18
2.4
18
84
0
52
25
18
36
20
1.95
39588--39671
42
2.0
42
90
0
132
35
10
21
32
1.88
39722--39822
33
3.1
32
76
8
98
12
33
37
15
1.86
39736--39822
33
2.7
32
85
1
111
12
34
37
14
1.85
39904--39991
33
2.7
33
89
3
124
11
31
39
17
1.85
40946--41062
32
3.6
32
91
1
171
17
43
26
11
1.84
41125--41294
32
5.2
32
73
8
121
12
34
38
14
1.84
41160--41282
32
3.8
32
75
15
128
11
32
39
16
1.84
41172--41314
64
2.2
64
96
1
259
11
34
37
17
1.85
42578--42613
15
2.4
15
90
9
56
61
0
0
38
0.96
44488--44521
3
11.3
3
93
0
59
0
0
67
32
0.91
55434--55485
20
2.5
20
84
3
59
46
11
11
30
1.76
56299--56344
22
2.0
24
83
8
60
50
4
17
28
1.65
56326--56443
57
2.1
57
91
0
191
35
2
27
33
1.71
56581--56688
48
2.2
48
95
0
189
36
31
22
10
1.87
56817--56857
20
2.0
20
95
0
73
19
19
19
41
1.91
57309--57344
16
2.3
16
95
4
65
58
16
5
19
1.58
57340--57384
22
2.0
22
91
0
72
46
26
6
20
1.75
57433--57477
22
2.0
22
100
0
90
46
26
4
22
1.70
57437--57487
22
2.3
22
89
3
75
49
25
5
19
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57511--57556
21
2.1
22
88
4
67
45
30
4
19
1.70
57410--57563
77
2.0
79
90
2
249
48
22
6
22
1.73
58013--59662
329
5.0
327
82
5
1851
37
16
14
31
1.89
58013--59662
327
5.0
328
83
5
1934
37
16
14
31
1.89

Tables:   1

The End!