Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009443.1 Corchorus capsularis cultivar CVL-1 contig09464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46912

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8945--9113
71
2.4
71
90
4
268
42
8
21
27
1.81
9231--9634
40
10.6
40
85
9
521
46
8
20
24
1.77
9231--9634
115
3.6
114
84
10
567
46
8
20
24
1.77
9246--9626
75
5.1
74
86
9
517
46
8
20
23
1.77
9700--9777
35
2.2
35
95
0
138
56
5
14
24
1.58
9701--9758
19
3.2
18
68
22
50
55
5
15
24
1.61
11128--11199
27
2.7
27
93
2
119
41
26
15
16
1.88
11127--11199
26
2.8
25
89
6
110
41
26
15
17
1.89
14626--14652
13
2.1
13
100
0
54
51
0
7
40
1.30
14733--14774
20
2.0
21
90
4
68
21
19
26
33
1.97
20180--20255
29
2.5
30
89
6
118
25
9
27
38
1.86
23064--23110
24
2.0
24
83
8
60
29
12
21
36
1.91
23187--23223
18
2.1
18
100
0
74
27
27
16
29
1.97
25498--25635
74
1.9
72
85
5
188
30
19
27
22
1.98
34507--34589
22
3.8
22
73
9
71
33
16
10
38
1.84
34510--34633
22
5.8
22
66
16
62
36
16
10
36
1.84
34756--34835
23
3.5
23
81
6
83
40
12
8
38
1.74
34752--35622
22
39.8
21
66
17
232
35
16
9
37
1.82
35405--35537
45
2.9
44
84
8
151
33
19
11
35
1.87
35520--35554
17
2.1
17
88
0
52
45
8
5
40
1.58

Tables:   1

The End!